Hi,
For questions relating to a specific package (if it is in rpm format, I
don't know what the Uuntu installation software uses as packages), you
can use the rpm search web site http://rpm.pbone.net/ (in addition to
http://www.rpmfind.net/ , can't search in rpmfind.net at the moment, it
Dear Sudhir,
You don not need to deposit these logfiles themselves, and only need to fill in
the fields in the web-mask of the PDB-desposition procedure with the appropriate
statistics you should find in these files.
Tim
On Wed, Oct 20, 2010 at 10:09:07AM +0530, Sudhir Kumar wrote:
dear all,
On 10/19/2010 12:39 AM, Jyotica Batra wrote:
Hi All
I have a dataset at 1.9A, spacegroup-P212121 (unit cell: 37.7, 39.52, 231.72,
90, 90, 90),
I used MR phaser and got a structure solution with LLG= 320 (1copy/a.u) .
During refinement, the R-free (50%) and R-factors (42%) never go down.
I
Dear Ed,
This libg2c:
http://dl.dropbox.com/u/3579334/libg2c.tgz
works with older scalepack versions requiring it. It is a 32 bit library and
should run on 64 bit and 32 bit systems.
I have not tried the 699m version of HKL2000, but 699a and 699k2 segfault on my
standard 64 bit Ubuntu
On Wed, Oct 20, 2010 at 10:13:09AM +, Leiman Petr wrote:
Dear Ed,
This libg2c:
http://dl.dropbox.com/u/3579334/libg2c.tgz
works with older scalepack versions requiring it. It is a 32 bit library and
should run on 64 bit and 32 bit systems.
I have not tried the 699m version of
We are still waiting for proofs, so it might be a few weeks before its
published. If anyone is interested, please email me requesting a preview
version.
Paula
PS: Francois, we did cite and used your work as starting point.
On 20 October 2010 10:39, francois@cbs.cnrs.fr
On the scalepack download site there are multiple versions of the
latest version.
drwxrwxr-x 20 root presiden 4096 Jun 2 12:27 archive
drwxr-xr-x 4 iwonapresiden 4096 Jul 17 2008 ver_098.698s
drwxr-xr-x 2 iwonapresiden 4096 Apr 3 2009 ver_098.699SM
drwxr-xr-x 3 iwona
Hi All,
I have engineered intra-molecular disulfide bond in my protein
monomer. The protein functions as a homodimer.
In crystal structure, there is clean electron density for the S-S
bond in one monomer (bond length 2.2A), but there seems to be
slightly messy density for the same in
Bart Hazes wrote a program (and published as well, Hazes Dijkstra perhaps)
called SSBOND I think. I cannot remember exactly what the computer program
does, but it certainly has a data base of possible disulphide bond
conformers. Hence I would myself certainly check your second didulphide to
Hi,
I have helices that I did rigid body refinement with Phaser (after phased
rotation and phased translation in Molrep). I compare FOM output by Phaser to
the FOM computed by sigmaA using the Phaser refined coordinates and found that
FOM from Phaser is only about half (~0.25) of FOM from
Dear All;
We just got some crystals from 35% (v/v) Dioxane. We are going to collect
some data soon.
Does anyone have the experience with the cryoprotectant in this condition?
Thanks a lot,
Jerry McCully
Dear ALL;
Firstly I'd like to thank folks for the various suggestions to handle the
degradation of MBP fusion protein.
According to these suggestions, I have tried shortening the linker between
MBP and target protein.
We can get decent yield of the full-length protein now.
Dear all,
Recently I deposited a structure to PDB. However, I was told
The R value of SF check are different from your reported value.
R work in SF check = 0.2859
your reported R work = 0.1474
Also there are no R free flags in your sending files, but you reported R
free value in
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