Re: [ccp4bb] phenix.real_space_correlation vs overlapmap

2011-05-10 Thread Eleanor Dodson
This may be too late to be of use, but as one of the authors of the sfall/overlapmap system.. sfall does generate a coded map which flags every grid point with a unique ID of the nearest atom, ie one which is unique providing there are not too many atoms - it is adequate for most molecules

Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread David Roberts
Not only do you not need a high-end graphics card, you don't even need the proper graphics drivers installed. When I went to FC13 (upgrade from FC7, I don't know why), my quadro fx1400 was no longer supported. It would not work with hardware stereo (emitters/glasses of old). I went to

Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Tim Gruene
Since the technique (of using polarised light) applied by the Zalman was invented in the 1920's, it's probably little surprising that we don't need special hardware for using it ;-) Cheers, Tim On Tue, May 10, 2011 at 07:08:10AM -0400, David Roberts wrote: Not only do you not need a high-end

[ccp4bb] Postdoctoral position - Structural Biology of Bacterial Secretion Systems

2011-05-10 Thread Gabriel Waksman
Institute of Structural and Molecular Biology, Faculty of Science, Department of Biological Sciences, Birkbeck College Postdoctoral Research Assistant – Ref: 10541, Full time, fixed term appointment for up to three years The Institute of Structural and Molecular Biology is seeking a Post-

[ccp4bb] Postdoctoral positions in Structural Biology

2011-05-10 Thread Raman, C.S.
Postdoctoral positions are available immediately in the Structural Biology Laboratory headed by Dr. C. S. Raman at the University of Maryland, Baltimore. Research in the Raman laboratory combines structural, biophysical, biochemical, and cell biological approaches to understand the molecular

[ccp4bb] Scientific software development post at Diamond Light Source, UK

2011-05-10 Thread Alun Ashton
Please see below details of a software development post available within the Scientific Software Team at Diamond. For full details please go to the web pages at: http://www.diamond.ac.uk/Home/Jobs/Current/DIA0618-TH.html Job Title: Software Engineer Job Reference: DIA0618/TH Post Type:

[ccp4bb] Experimental Postdoctoral Position in High Throughput Small Molecule Ligand Screening

2011-05-10 Thread Jessica Gilmore
Experimental Postdoctoral Position in High Throughput Small Molecule Ligand Screening Outstanding postdoctoral applicants to work jointly with Drs. Julia Kubakek, Mark Hay and Jeffrey Skolnick at the Georgia Institute of Technology are sought with the following qualifications: * Extensive

Re: [ccp4bb] Chlorine atoms in ligand during refinement

2011-05-10 Thread Artem Evdokimov
Check the PDB - looks like you defined them as C rather than Cl somehow. Check their temperature factors, I bet they're way lower than the rest of the ligand. Also the arginine residue in the top left corner seems to be mis-modeled - there's a water molecule where its end should be (and a nice

Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Eric Bennett
Nvidia lists that monitor on their list of supported hardware: http://www.nvidia.com/object/3d-vision-requirements.html They even sell some Acer monitors in their online store although they are labeled in conflicting ways. I tried upgrading the driver yesterday to the 270.41.06 version but it

Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Sabuj Pattanayek
Hi, I tried upgrading the driver yesterday to the 270.41.06 version but it didn't make any difference, still only 100 Hz.  Are you using Windows or Linux?   We're using the 64-bit Linux driver. We had the same problem initially with the Asus VG236 until we went into nvidia-settings and

Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Jim Fairman
Turning off force full gpu scaling is indeed the solution to this problem (at least it was for me). On May 10, 2011 6:58 PM, Eric Bennett er...@pobox.com wrote: Nvidia lists that monitor on their list of supported hardware: http://www.nvidia.com/object/3d-vision-requirements.html They even

Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Schubert, Carsten [PRDUS]
Eric, Takaaki: I just remembered that we ran into the same problem. If you are using Linux try launching 'nvidia-settings' and disable GPU scaling. That helped with some of our monitors, which exhibited the same problem. Not sure if that would be applicable to Windows though. HTH Carsten

Re: [ccp4bb] Stereo solution with Nvidia '3D vision' or '3D vision pro'

2011-05-10 Thread Takaaki Fukami
Hi, Eric and Carsten, If you are using Linux try launching 'nvidia-settings' and disable GPU scaling. My system was RedHat5 64-bit. I set the option at that time, though I forgot to mention it… nvidia-settings stores the settings into ~/.nvidia-setting-rc, therefore it is not system-wide. I