Hi Ed,
What about submitting the uniprot accession number of your
protein to the PDB?. As you know, this will just list the all entries
where your protein sequence is there..
-Vandu murugan..
On 6/23/12, Ed Pozharski epozh...@umaryland.edu wrote:
Silly question.
Say I want to find
Hi Ed, If you are looking for a specific protein, why not get all PDB files
with a DBREF record pointing at the uniprot record of the protein you want? You
can do a simple text search in the PDB, e.g. 'MYG_PHYCA'. Cheers,Robbie
Date: Fri, 22 Jun 2012 22:39:12 -0400
From:
Hi,
The up-to-date list of mappings between PDB and sequence database
UniProt is available at -
ftp://ftp.ebi.ac.uk/pub/databases/msd/sifts/csv/pdb_chain_uniprot.csv
This gives mapping between PDB chains and UniProt accession numbers. This
will allow you to find all DB entries for a particular
Because I want all the structures of a particular protein itself, not it's
homologues. I just went through several cycles of reducing E-value down to
If you know the UniProt accession code of your protein, then UniPDB is your
friend - pdbe.org/unipdb
If not, try pdbe.org/fasta where you can
