The domain common to both crystals constitutes the averaging mask. (you can
make it around the pdb using ncsmask).
As for describing it to dmmulti, you need the rotation matrix which maps it
from crystal 1 to crystal 2.
The rotation matrix for crystal one is always the identity matrix. You wi
We are working with two crystals. Both crystals have a domain that
is not in the other. Both crystals have one domain that is the same
in each. We'd like the average the one domain between the crystals,
but leave the other domains unaveraged.
How do we describe that to dmmulti?
thanks,
Dave
Post-doctoral Position in Structural Biology
A post-doctoral position is available for a person with experience
in protein or virus crystallography. Some experience in electron microscopy
would be desirable but not essential. The work of the laboratory centers on
the structure and f
Dear CCP4 Users,
A CCP4 update has just been released, consisting of the following changes.
For Linux and Mac:
- *areaimol*: fixed segmentation fault due to a bug in dynamic memory
allocation
- *cprodrg*: HETATM notations synchronised with refmac
- *ccp4i*: fixes in refmac harvesting
If you are looking for reflection files, the tricky part is that in CNS
format they did not include the unit cell parameters. Just to locate
them, it may be helpful to know that they contain a header that looks
like this
NREFlection= 49238
ANOMalous=FALSe { equiv. to HERMitian=TRUE}
DECLa
Add another extension to your search: *.mtf
If your structure was refined with CNS, chances are you'll find its
Molecular Topology File somewhere.
Best of luck,
Jon
2012/9/21 vellieux
> As was mentioned, the diffraction data files can be named according to
> the user's wish. But I'd try to l
As was mentioned, the diffraction data files can be named according to
the user's wish. But I'd try to locate files with extensions .hkl, .xpl,
.cv (and .cns? although I have never seen that extension used myself)
Fred.
On 21/09/12 12:10, Rex Palmer wrote:
I have been presented with the proble
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear Rex,
CNS uses input files, which are listed e.g. at
http://cns.csb.yale.edu/v1.2/
When I used CNS I always had to use 'generate.inp' so i would start
search for this. However, they can be freely renamed, I am afraid.
Good luck,
Tim
On 09/21/20
I have been presented with the problem of locating protein data for a structure
which was refined here ten years ago with the CNS program.
Unfortunately I have never used this program so do not know what type of files
I am looking for (or how many files).
Any suggestions please
Rex Palmer
http:/
We are seeking a post-doctoral Research Associate in Structural Biology to work
in the Microbiology Section within the Division of Infectious Diseases,
Department of Medicine at Imperial College London
The research project is aimed at understanding the molecular mechanisms that
allow bacteria o
Dear all ,
my job is to clone part of the gene already carried on pJC40 vector .i sent
this vector for sequencing . i made also squence
alignment, i have found only 97% identity . this mean about five nuclutides
are not matching with original sequence . when i made protein blast i
also found 4
Postdoctoral Fellow – Protein Crystallography University of Oklahoma Health Sciences Center, USA A postdoctoral position is available immediately in the laboratory of Dr. Marie Hanigan for a highly motivated, creative individual with strong interest in the structure and function of enzymes relevant
Dear Niu,
MAIN can do it (http://www-bmb.ijs.si).
dusan
On Sep 21, 2012, at 1:06 AM, CCP4BB automatic digest system wrote:
> Date:Wed, 19 Sep 2012 15:25:50 -0700
> From:Niu Tou
> Subject: Program for map rotation
>
> Dear colleagues,
>
> Is there any program can rotate a density map
Hi Fred,
on today's PC hardware, a 64bit Linux should be used.
We have been using
coot-0.7-pre-1-revision-3965-binary-Linux-x86_64-centos-5-python-gtk2 on our
64bit SL 6.3 systems without problems.
I just now installed
coot-0.7-pre-1-revision-4360-binary-Linux-x86_64-centos-6-python-gtk2 on
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