Dear All,
On behalf of Dr. Jia-huai Wang, I post this message. For inquiries please
contact Dr. Wang directly at jw...@red.dfci.harvard.edu
Postdoctoral Position in
Structural Biology of Immune Receptors:
There is an immediate opening for a
postdoctoral position in protein crystallography at
Dear All
just want to ask the difference between labelling your protein with D L
selenomethionine mixture and L selenomethionine alone..will it make
difference in anomalous diffraction,detection of Se signal and extraction
of phases. Or will be the same for both..?
--
Regards
Faisal
School of
I am apologizing for sending an unintended email to CCP4 via CC.
Matthias, EMBL Hamburg
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Dear ,
I am not up to date, but is there an expression system that allows you
to incorporate D-amino acids into proteins? In terms of phasing only
the Se-atom is a point or sphere, so the signal won't be altered
provided the position of that atom
Hi all,
I am currently validating my protein and experiencing a few issues. I am unable
to fix the torsion angles for eight residues no matter what I try. There are 3
models deposited on the PDB website belonging to the same protein. Five of the
residues’ torsion angles (of the eight) are
Hello,
There are examples of regions (such as loops) where the electron density
is rather poor and does not allow to build a proper model of the
polypeptide chain (the refinement program cannot fit a satisfactory
model in that area). Hence you just know that the chain goes through
there and
Also, a very small fraction of amino acids have torsion angles that are really
outside normal ranges, as demonstrated by high resolution structures.
If the density is convincing, leave them as they are.
Mark J van Raaij
Laboratorio M-4
Dpto de Estructura de Macromoleculas
Centro Nacional de
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Dear KS,
in addition to what Mark said, you might think about why the torsion
angles are this way, i.e. there might be interactions which twist your
protein into that conformation.
Only because something is reported as off-standard does not mean it
Tim,
My understanding is that the D-isomer does not get incorporated. I could be
wrong though. Bacteria may convert the D to the L-form.
Chitta
- Original Message -
From: Tim Gruene t...@shelx.uni-ac.gwdg.de
To: CCP4BB@JISCMAIL.AC.UK
Sent: Monday, November 12, 2012 4:25:34 AM
Hi Matthias,
I have not read your attached MS however Figure 2 is very good. Congrats to the
first author for a very captive and engaging view of your protein.
Jürgen
On Nov 12, 2012, at 4:24 AM, Matthias Wilmanns wrote:
I am apologizing for sending an unintended email to CCP4 via CC.
thanx all for their nice suggestions
On Mon, Nov 12, 2012 at 6:23 PM, Chittaranjan Das c...@purdue.edu wrote:
Tim,
My understanding is that the D-isomer does not get incorporated. I could
be wrong though. Bacteria may convert the D to the L-form.
Chitta
- Original Message -
Dear All,
I would be interested to learn of other crystallographers' experience
in their use of glass capillaries for protein crystal growth and X-ray
diffraction clarity.
There are many types of glass available - quartz, soda glass,
borosilicate, etc. Are there specific types which people
Light glasses such as borosilicate. Can be purchased from Hampton research.
FF
Dr Felix Frolow
Professor of Structural Biology and Biotechnology, Department of Molecular
Microbiology and Biotechnology
Tel Aviv University 69978, Israel
Acta Crystallographica F, co-editor
e-mail:
Hi Michael,
I would recommend an alternative
http://www.mitegen.com/products/micrort/micrort.shtml
Traditional capillary is a pain to handle, unless you have a rock sized
crystal.
Good luck,
Nian Huang
On Mon, Nov 12, 2012 at 11:13 AM, Michael Roberts
mrobert...@talktalk.netwrote:
Dear All,
I
Traditional crystallography is difficult to practice, unless you know
mathematics, physics, chemistry, computing etc….. :-)
If one need to make science with room temperature diffraction, there is know
substitution to old type glass capillaries that can be properly sealed :-\
FF
Dr Felix Frolow
The Triana range of capillaries are very easy to use for screening etc
On 12 November 2012 16:13, Michael Roberts mrobert...@talktalk.net wrote:
Dear All,
I would be interested to learn of other crystallographers' experience in
their use of glass capillaries for protein crystal growth and
I apologise for typing in dark. That is why know substitute no :-\
Dr Felix Frolow
Professor of Structural Biology and Biotechnology, Department of Molecular
Microbiology and Biotechnology
Tel Aviv University 69978, Israel
Acta Crystallographica F, co-editor
e-mail: mbfro...@post.tau.ac.il
On Nov 12, 2012, at 8:13 AM, Michael Roberts mrobert...@talktalk.net wrote:
Dear All,
I would be interested to learn of other crystallographers' experience in
their use of glass capillaries for protein crystal growth and X-ray
diffraction clarity.
There are many types of glass available
Dear everyone:
I have got the returned cr_info.dat to /usr/local/lib and
/usr/local/hklint,when I typing HKL2000,it still display:
dell@ubuntu:~$ HKL2000
ERROR: Not a valid HKL-2000 license: Licence info file (cr_info) not found
Error code: -1
So could anyone can help me ?
2012/11/9 王瑞
It should be called cr_info
you have to : sudo chmod +x cr_info in the directory were it is, I think it
should be executable
try to activate HKL2000 first of all from there :
cd /usr/local/lib
HKL2000
FF
Dr Felix Frolow
Professor of Structural Biology and Biotechnology, Department of
Dear all
In *initial screening* using vapor diffusion crystallization, does it matter
whether the reservoir buffer is also the precipitant in the drop or just a high
salt solution like 5 M NaCl?
Thank you.
Theresa
You should and can try, but I guess 5 M NaCl will dry your drop quite fast,
unless in your drop NaCl concentration is ~2,5 M :-) That is why first mixture
of well and protein solution is 1:1 v/v.
Other variations such as 1:9, 9:1 etc sometimes help.
Dr Felix Frolow
Professor of Structural
The following could be of use:
Newman, J. Expanding screening space through the use of alternative reservoirs
in vapor diffusion (2005) Acta Cryst D61(4), 490-493
Cheers, tom
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Felix
Frolow
Sent: Tuesday, 13 November 2012
Dear Theresa,
an interesting question, I think the answer is yes it does, very
much. Using Raoult's law we can calculate the equilibrium vapour
pressure above a 5M NaCl solution, it is a relative humidity of 82.6%.
This is much lower than say a solution of 20% PEG 4000, here we can
again
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