Postdoctoral position in computational structural biology
Dept. of Medical Biochemistry and Biophysics, Karolinska Institutet
A postdoctoral position is available immediately in the Molecular
Structural Biology group at the Karolinska Institutet in Stockholm
(http://phillips.mbb.ki.se/). The
Dear BBers,
I’d like to draw your attention to a post available from immediately until
March 2016 working on interdisciplinary structural biology of CDK-containing
complexes involved in regulating transcription and/or the cell-cycle. The post,
which will be held at the Northern Institute for
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Calculate_average_I/sigma_from_.sca_file
Qixu Cai
Email: caiq...@gmail.com
School of Life Sciences,
Xiamen University, Fujian, China
**from thunderbird**
On 02/13/2014 12:20 AM, Ronald E Stenkamp wrote:
How did people get I/sigmI
I'm posting this on behalf of Prof. Pål Stenmark. Please direct all
correspondence regarding this position to the email specified below
(struct...@dbb.su.se).
Cheers,
Ronnie Berntsson
The Stenmark group study novel cancer targets involved within human nucleotide
metabolism. This project is
Dear all,
I'm filling out my table for NSMB, about a structure of protein ligand
bound to a receptor. They ask for 3 different lines regarding number
of atoms bfactor. 1) Protein 2) Ligand/Ion 3) Water.
Does my protein ligand belong to Protein or Ligand/Ion?
Thanks,
On Tue, Feb 18, 2014 at 8:19 AM, Jan van Agthoven janc...@gmail.com wrote:
I'm filling out my table for NSMB, about a structure of protein ligand
bound to a receptor. They ask for 3 different lines regarding number
of atoms bfactor. 1) Protein 2) Ligand/Ion 3) Water.
Does my protein ligand
Hi Jan -
I believe that ligand in this case refers to small molecule ligands,
e.g. ATP or NADPH. If your ligand is a protein or even a peptide, I
think it belongs in the protein category. (Thus, you may have no
ligand atoms, unless you have bound sulfate, PEG, etc.)
- Matt
On 2/18/14
I would have thought that ligands are ligand/ion?. What I have just
done with a recent structure and I await the reviewers noticing or not
is include the ethylene glycol from the cryo that I can (probably) see
in a solvent (rather than water) atom number and bfactor line along with
water
Sorry misread the initial post. Yes a protein ligand should be in the
protein but you could give B factor number for each chain- my comments
about what goes in ligand and what in solvent may be of general
interest/comment
Nick
--
Prof Nicholas H. Keep
Executive Dean of School of Science
If the ligand is a bona fide protein (more than a few amino acids and its own
stable fold), I would include it under protein. However it is a matter of taste
and, as Nat says, it will probably be dumped in the supplementary materials to
be never looked at again.
Herman
Von: CCP4 bulletin
We are looking for a high calibre software scientist to join our scientific
software group to work on visualization and analysis of diffraction and
spectral data. The group have the responsibility for the provision of advanced
data evaluation, analysis and visualization software applications
Thanks for all responses,
Yes I'll keep my ligand in the protein section, and will add extra
information regarding the ligand/receptor. They actually asked for
separate b-factors during review, so I guess they'll be willing to see
it in the final table.
Jan
2014-02-18 11:39 UTC-05:00,
I agree that simple truncation is not a great way to create a
lower-resolution dataset. However, neither is simply applying a B
factor. It is harder than that to fool the downstream phasing
programs you will probably be running.
That said, the combination of a B factor with a resolution
Hi all,
I'm looking for a cryo condition for high NaCl (3+ M) crystallization
condition. I would do it the proper way, but our beam/cryostream is down.
I've tried a bunch of things at the moment. Ethylene glycol and PEG 400
nuke the crystals immediately even at low concentrations. Prolonged
Dear,
Does anyone know how to merge two molecules with different symmetry?
I will explain:
I have done the molecular replacement using the domains of the molecules
separately, now I have to put all together, however they have a different
symmetry.
I will appreciate any kind of help.
Regards,
How about a short swish in well solution + 25-30% glucose? Doesn't take
long to cryoprotect, just a quick sufrace coat. Sodium malonate? We just
froze some really fragile crystals from 1.8 M sodium formate in 3 M
sodium malonate and they held up really well. (Still didn't improve
their
Colleagues,
I was happily using my NuVision 60GX emitter with Quadro FX1400 graphics card
for number of years on CRT and recently something went bad and image will flip
regularly sending front to back and vice versa. First I thought the card went
bad but after installing new one nothing
Dear ccp4bb,
this is a gentle reminder for the application deadline of the
International Summer School of Crystallography, held in Hamburg,
Germany.
The deadline will be the 28th of February. For further information
please visit our website:
http://conferences.cfel.de/issc14
In case you are
Did your OS/nvidia driver get upgraded? There's a bug in all of the modern
nvidia drivers that cause this on the quadro 1300/1400 series. It works
fine with the older nvidia drivers, e.g. 173.14.31 (note the legacy
9x.xx.xx drivers have the same problem). We're still able to use that
version of
Dear Users,
Which value in scala log file indicate the Number of
unique reflection (all) that needs to be entered during
the deposition of structure in RCSB.
Thank you
Regards
Kavya
--
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