[ccp4bb] Phaser: tNCS present but correction not applied

2016-11-25 Thread KAUSHIK H.S.
Hello, I have a crystal in C2 spacegroup (94.2073 148.003 72.9967 90 97.6686 90) and Xtriage predicts 923 residues in ASU.  My protein could be anywhere between 95 to 110 residues long (assuming the terminals could be cleaved).  Using a homolog, Phaser gives me a solution with LLG=1072 and TFZ=4

Re: [ccp4bb] 5th Banff Meeting on Structural Dynamics, 18/19th Febr. - 22nd February 2017

2016-11-25 Thread Vivian Saridakis
The conversation is continuing but very positive. Remarkable. Vivian > On Nov 25, 2016, at 4:55 PM, Jenny Martin (IMB) UQ > wrote: > > A starting point would be to adopt a policy and stick to it - > as the ACA has done: http://www.amercrystalassn.org/speaker-policy > Similarly SCANZ: http://ww

[ccp4bb] 5th Banff Meeting on Structural Dynamics, 18/19th Febr. - 22nd February 2017

2016-11-25 Thread Jenny Martin (IMB) UQ
A starting point would be to adopt a policy and stick to it - as the ACA has done: http://www.amercrystalassn.org/speaker-policy Similarly SCANZ: http://www.crystal29.com/conference-policy/ For more in

Re: [ccp4bb] 5th Banff Meeting on Structural Dynamics, 18/19th Febr. - 22nd February 2017

2016-11-25 Thread Gerlind Sulzenbacher
Hi Carlos and friends, somewhere I understood that this discussion was about women in SCIENCE, and not about politics in general. But being a woman myself, maybe I understood wrongly. Thanks Eddie and all the other sensitive people of male gender for bringing up and sustaining this discussion.

Re: [ccp4bb] 5th Banff Meeting on Structural Dynamics, 18/19th Febr. - 22nd February 2017

2016-11-25 Thread Carlos Pla Prats
Like it happened when Trump won the election, someone with a slightly different view will reply and then we will agree to use this board only for science.

Re: [ccp4bb] 5th Banff Meeting on Structural Dynamics, 18/19th Febr. - 22nd February 2017

2016-11-25 Thread Jurgen Bosch
Just because we have modern technology doesn't mean we have socially made progress or for that matter made mental progress regarding women in science, which in my opinion is a huge mistake . Despite many efforts, many fields are still very male dominated. Eddie, I like you stirring up the pot.

Re: [ccp4bb] diffraction images simulator

2016-11-25 Thread Bernhard Rupp (Hofkristallrat a.D.)
Contact James Holton, he has MLFSOM and other goodies. James Holton (jmhol...@lbl.gov) Best, BR From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Daniele de Sanctis Sent: Friday, November 25, 2016 8:45 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] diffraction images s

Re: [ccp4bb] programmatically get mtz files from PDB_REDO

2016-11-25 Thread Robbie Joosten
Hi Rob, You are right that the two characters are the middle two of the PDBid. The server that generates the list of entries is being fixed. Cheers, Robbie Verzonden vanaf mijn Windows 10-telefoon Van: R.D. Oeffner Verzonden: vrijdag 25 november 2016 18:52 Aan: CCP4BB@J

[ccp4bb] programmatically get mtz files from PDB_REDO

2016-11-25 Thread R.D. Oeffner
Hi, I would like to get mtz files via a script from the PDB_REDO server. The documentation on http://www.cmbi.ru.nl/pdb_redo/downloads.html suggests that the way to get the refined file, 1xhb_final.mtz, for the structure 1XHB is to run the command: wget www.cmbi.ru.nl/pdb_redo/xh/1xhb/1xhb_f

Re: [ccp4bb] 5th Banff Meeting on Structural Dynamics, 18/19th Febr. - 22nd February 2017

2016-11-25 Thread Gerd Rosenbaum
Very good point, Eddie. The exclusion of females starts already with the Program Committee. Gerd Rosenbaum On 25.11.2016 10:48, Edward Snell wrote: ​This looks like a very interesting scientific meeting but I would just like to point out an observation based on the current invited speakers

Re: [ccp4bb] 5th Banff Meeting on Structural Dynamics, 18/19th Febr. - 22nd February 2017

2016-11-25 Thread Edward Snell
?This looks like a very interesting scientific meeting but I would just like to point out an observation based on the current invited speakers and program committee - there are also scientists who are women in this field. Gentleman, a little bit of effort would go a long way. Apologies for m

[ccp4bb] diffraction images simulator

2016-11-25 Thread Daniele de Sanctis
Hi all, I need to simulate some diffraction images and play with different parameters (divergence, flux, bandwitdh, beamsize, crystal size, ...), and I was wondering what are the most up-to-date available software . Thanks for your help Daniele -- ἀρετή ---

[ccp4bb] 5th Banff Meeting on Structural Dynamics, 18/19th Febr. - 22nd February 2017

2016-11-25 Thread Kleine, Irmtraud
Dear all, This is to remind you of the 5th Banff Meeting on Structural Dynamics https://banff2017.desy.de/ which will take place 18/19th February - 22nd February 2017. Please register now for and benefit from early-bird registration fee. Best regards, Irmtraud Kleine Assistant to

Re: [ccp4bb] Unsubcribed

2016-11-25 Thread Ekiert, Damian
Ting and CCP4ers, I want to apologize for my unkind words, which were completely out if line. In a moment of frustration, I sent this and immediately regretted it. And with a twist if irony, I sent it to the entire list instead of just one user, precisely what I was complaining about! I did

[ccp4bb] Bent crystal integration

2016-11-25 Thread Eugene Osipov
Dear community, I've collected dataset from thin protein crystal which was obviously bent during manipulations. Magnified spots shape from images 90 degrees apart: http://imgur.com/a/8nI1k Is it possible to correctly integrate such wide spots? Does XDS correctly detects integration box for them? P

[ccp4bb] Another problem after last CCP4 update...

2016-11-25 Thread Rafal Dolot
Dear CCP4 users, I observed problems with "Real space refine zone" in Coot after CCP4 package last update, which revealed a complete disaster in phosphate groups of nucleotides... Windows 8.1 system Best regards, Rafal -- |--| |Rafal Dolot, Ph.D.