Dear community
Sorry for an off-topic question here. I wonder if anyone may be aware of
any glycan modification database where we can predict what is what. For
example, if I got a mass difference of m/z X on LC-MS, and I would like to
have a rough idea what it might be, where should I go for?
Greetings all,
I hope everyone had a nice weekend.
I'm also writing to report what might be a bug in the version of pdb2ins
distributed with CCP4. On some (but not all) of my linux systems I'm
getting this error message from pdb2ins at random. If I run the same
command ~10 times in a row,
A postdoctoral position is available immediately to participate in an
inter-disciplinary research program on biophysical studies of HIV proteins and
virions at the Institute of Human Virology of University of Maryland School of
Medicine, Baltimore, MD. We are looking for a highly motivated
The way things generally work in ChimeraX is that each model/map is stored
internally with its original coordinates unchanged, along with one or more
transforms placing it into scene coordinates. Saving model A relative to
model/map B means that the coordinates to be saved are transformed such
It's not important, but I am curious what 'Save relative to model/map' actually
means in that widget. Is it just a case of copying the relevant CRYST1 card? I
think Faisal is asking how to save new/modified coordinates but probably I
misunderstood...
Cheers, Jon.C.
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Further detailed
Hi Faisal,
Are you using the latest version (1.2.5)? That should give you a dialog that
looks something like this.
Best regards,
Tristan
[cid:c60bb51b-6f11-4646-9800-6ce976abc3f0]
From: khaja faisal tarique
Sent: 28 June 2021 10:29
To: Tristan Croll
Cc:
Hi Tristan
I have posted my question in ChimeraX mailing list as well and waiting for
their reply.
What you are suggesting is for Chimera. I dont see any such option in
ChimeraX. That save relative to section does not appear here or may be
there is a different way of saving model relative to map
Hi Faisal,
This is really a question for the ChimeraX-users list
(chimerax-us...@cgl.ucsf.edu). But the quick run-down: using the File/Save
dialogue, you'll see a checkbox with "Save relative to model: " and then a
drop-down menu. Just choose the map in the drop-down menu, and you should get
Hello everyone
While doing rigid body fit we know that after placing the coordinate to its
correct position we can save it with respect to the map. Does anyone know
if a similar feature exists in ChimeraX ? Is there a way where the
coordinates .pdb/cif file can be saved with respect to its map
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