Re: [ccp4bb] Refinement of heavy atoms using SOLVE or SHARP or others

2023-10-11 Thread Boaz Shaanan
Hi, If you're using Sharp for phasing, it'll refine the positions and occupancies of the heavy atoms that Shelx has picked up in the first stage. I used Sharp a long time ago but I'm pretty sure it still works that way. My 2p. Boaz Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben Gurion

Re: [ccp4bb] Refinement of heavy atoms using SOLVE or SHARP or others

2023-10-11 Thread Aaron Finke
Hi, SHARP and autoSHARP are manually run using the Sushi interface, which is not the easiest thing to set up. For straightforward heavy atom refinement, you can run both SHARP and autoSHARP on the command line. If you are familiar with SHARP’s input files and parameters, instructions can be

[ccp4bb] CCP4i2 new jobs are not displaying results correctly

2023-10-11 Thread Foster, Samuel
Hi all, When I run a new job on CCP4i2, the job finishes and output files are produced however the results are not correctly displayed. I noticed this after updating to 8.0.016 but the problem persists when I rolled the update back to the last stable build on my machine, 8.0.009. Previous jobs

Re: [ccp4bb] Refinement of heavy atoms using SOLVE or SHARP or others

2023-10-11 Thread Eleanor Dodson
Hmm - I can give you scripts to use SHELX? Eleanor On Wed, 11 Oct 2023 at 11:02, fuxingke wrote: > Dear Colleagues, > Reacently, for SAD experiment, I find SOLVE and SHARP can refine the > variables > of heavy atoms, such as occupancies, coordinates and thermal parameters. > But how to

[ccp4bb] Refinement of heavy atoms using SOLVE or SHARP or others

2023-10-11 Thread fuxingke
Dear Colleagues, Reacently, for SAD experiment, I find SOLVE and SHARP can refine the variables of heavy atoms, such as occupancies, coordinates and thermal parameters. But how to use SOLVE and SHARP to refine heavy atom in command line in linux? I don't find a script to do it. Who