Re: [ccp4bb] Generate adx code

2021-07-22 Thread Doo Nam Kim
I changed character :: string*132,frmnam*103,form*6='(i0.0)' to character :: string*550,frmnam*512,form*6='(i0.0)' and recompiled. Now, it generates adx files with .adx extension. It generates only 5~56 .adx files from 1~60 .img files, but I think that this is because my

Re: [ccp4bb] Generate adx code

2021-07-21 Thread Doo Nam Kim
Yes, lack of extension is the only remaining problem. Although I automatically added extension by python, your link seems useful as well. I'm not sure about opening adx files in linux, but when I ran generate_adx in linux, and opened adx files by adxv in macOS, the adxv said Loading

[ccp4bb] Generate adx code

2021-07-20 Thread Doo Nam Kim
Dear all, Can I have a working Fortran code for generate_adx? I copied the code from https://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Generate_adx There are some different lines (than original in website), so I manually corrected and then compiled. However, generated output files

[ccp4bb] [Resolved] Re: [xds] how to specify measuring angle

2020-10-21 Thread Doo Nam Kim
Dear all, What I knew is starting angle (-60) and ending angle (+60). Additionally, I know number of image files generated by mrc2smv is 120 from my mrc files. Since it is conventional to delete/omit first/last image, changing into a decently "accurate" approximation as STARTING_ANGLE=-60

[ccp4bb] Install coot in linux

2020-10-21 Thread Doo Nam Kim
Since I can't access  http://www.ysbl.york.ac.uk/~emsley/software/binaries/nightlies/pre-release/ I installed coot by installing ccp4. However, I can't launch coot in my terminal (I logged in with ssh -X) with a below message.

Re: [ccp4bb] [xds] how to specify measuring angle

2020-10-09 Thread Doo Nam Kim
Once I turned off my vpn, I could download from https://data.sbgrid.org/dataset/222/ Thank you for your help. To unsubscribe from the CCP4BB list, click the following link:

Re: [ccp4bb] [xds] how to specify measuring angle

2020-10-09 Thread Doo Nam Kim
Thank you Tim and Kay. "the indexing procedure is independent of the starting angle of the first frame." --> I see, since XDS does indexing, I think that XDS is independent of the starting angle of the first frame "Are you possibly looking for the OSCILLATION_WIDTH=, i.e. the degree per

[ccp4bb] [xds] how to specify measuring angle

2020-10-08 Thread Doo Nam Kim
I think that my microED data was measured with -60 to 60 rotation angle. However, STARTING_ANGLE= -60. in my XDS.INP resulted in ... # COORDINATES OF REC. BASIS VECTORREDUCED CELL INDICES 1 0.0020349 0.0108237 0.0096964 1.00 -0.00 -0.00 2