Dear all,
I am looking for a way to automate molecular replacement and refinement
runs.
From ligand / fragment screening trials we have many datasets of the same
protein with various resolutions (2.8 – 1.2Å). The apo-structure is known
and well refined. The cell constants are fairly similar
Hello everyone,
I would like to display the interactions of a protein dsDNA complex in a
simplified 2D plot, similar to what LIGPLOT does for protein ligand
interactions. In many articles you find interactions displayed in such a way
but as far as I know those are hand-made. In my experience
Dear Coot-users,
I am running Coot-0.7 on OSX 10.6.8. Installation from the 'Scott'-package
was no problem at all it runs very smoothly.
However, whenever I want to save the coordinates the saving dialog open
-behind- the main window. To be more precise: the coordinate molecule
selector opens
Hello everyone,
I am working on protein RNA complex and would like to verify the
oligomeric state from the crystal structure by analytical
ultracentrifugation (AUC). To fit data from AUC we need a good estimate of
the partial specific volume of the complex, therefore I wanted to retrieve
this
Hello everybody,
This is slightly off-topic but I still hope there might be somebody in the
crowd with (Py)Rosetta experience. I successfully tried protein_protein
docking before, but now I am trying to dock a RNA into a protein using
PyRosetta v.1.1, which, as you can imagine, fails in a new an
Hello Kornelius,
In 2 or 3 cases I successfully used a homology model for molecular
replacement using a model generated from the PHYRE server
http://www.sbg.bio.ic.ac.uk/~phyre/.
I know it is not the same as ROSETTA but if there is some sequence homology
you might be lucky...
Best regards
Eike
Hello Dave,
I have good experience with concentrations between 10% and 15%
2,3-butanediol. My typical starting concentration is 12.5%.
Good luck.
Eike
Am 23.03.10 08:27 schrieb David Briggs unter drdavidcbri...@gmail.com:
2,3-BD users,
What sort of concentrations are you using?
Hello Everyone,
I am posting this in behalf of Ralf Ficner, please do not reply to me
but directly contact Ralf Ficner (see below).
Kind regards
Eike
The Department of Structural Biology at the Georg-August-University
Goettingen, Germany, seeks to recruit an outstanding postdoctoral
from the ccp4i
GUI - it complains not to be able to extract data from an .mtz file.
Did I miss anything important?
Kind regards
Eike
On Fri, 2008-05-16 at 14:37 -0700, William Scott wrote:
On Fri, May 16, 2008 1:06 pm, Eike Schulz wrote:
Hello everybody
,
although I have a much better one that makes use of zsh customizable
completions and so forth).
Here's some more info on unix shells: http://xanana.ucsc.edu/xtal/unix.html
On May 17, 2008, at 1:48 AM, Eike Schulz wrote:
Hello again,
sourcing environ.def or ccp4.setup-bash
Hello everybody,
once more a beginners question on some probably Linux related problem.
Eventhough my ccp4 installation seemed to work fine all the way MTZDUMP
and the applications which use it (namely refmac ...) unfortunatly fail
with the following error:
not to be able to extract data from an .mtz file.
Did I miss anything important?
Kind regards
Eike
On Fri, 2008-05-16 at 14:37 -0700, William Scott wrote:
On Fri, May 16, 2008 1:06 pm, Eike Schulz wrote:
Hello everybody
Hello everyone,
I have a couple of structures which contain oligomeric sugars in
different conformations. Is there any general way of defining a
glycosidic bond for the refmac library - instead of creating .cif files
for every single ligand-structure ?
Thank you very much in advance
Eike
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