[ccp4bb] Phenix.pdbtools Algorithm

2012-08-06 Thread Scott Foy
Hello everyone, I am having a difficult time determining what type of geometry regularization algorithm is used in Phenix.pdbtools (e.g., least squares, maximum likelihood, energy minimization, etc.). I would appreciate if anyone can clarify, as well as point me to the appropriate

Re: [ccp4bb] Structure Refinement Program

2012-07-28 Thread Scott Foy
I plan to just clean up the data.

[ccp4bb] Structure Refinement Program

2012-07-23 Thread Scott Foy
for these, or other, programs. We will need to refine thousands of PDB files so speed is a significant consideration. Thank you everyone for your input. Sincerely, Scott Foy s...@mail.umkc.edu