Re: [ccp4bb] ILLUSTRATE in PYMOL

2023-08-16 Thread khaja faisal tarique
Thanks everyone for their valuable feedback. It helped a lot. Best Faisal On Tue, 15 Aug 2023, 19:19 khaja faisal tarique, < khajafaisaltari...@gmail.com> wrote: > Hi everyone > > Is there any way to make surface representation of a protein structure > similar to th

Re: [ccp4bb] [EXTERNAL] Re: [ccp4bb] ILLUSTRATE in PYMOL

2023-08-16 Thread khaja faisal tarique
> *From:* CCP4 bulletin board on behalf of Pius >> Padayatti >> *Sent:* Tuesday, August 15, 2023 8:24 PM >> *To:* CCP4BB@JISCMAIL.AC.UK >> *Subject:* [EXTERNAL] Re: [ccp4bb] ILLUSTRATE in PYMOL >> >> https://pymolwiki.org/index.php/APBS >> <htt

[ccp4bb] ILLUSTRATE in PYMOL

2023-08-15 Thread khaja faisal tarique
Hi everyone Is there any way to make surface representation of a protein structure similar to the 'Illustrate: Non-photorealistic Biomolecular Illustration' ( https://ccsb.scripps.edu/illustrate/) using scripts in Pymol ? It will be really helpful if someone can share this with me. Thanks

Re: [ccp4bb] saving coordinates with respect to map in ChimeraX

2021-06-28 Thread khaja faisal tarique
see a checkbox with "Save relative to model: " and then a > drop-down menu. Just choose the map in the drop-down menu, and you should > get the result you want. > > Best regards, > Tristan > -- > *From:* CCP4 bulletin board on behalf of khaja

[ccp4bb] saving coordinates with respect to map in ChimeraX

2021-06-28 Thread khaja faisal tarique
Hello everyone While doing rigid body fit we know that after placing the coordinate to its correct position we can save it with respect to the map. Does anyone know if a similar feature exists in ChimeraX ? Is there a way where the coordinates .pdb/cif file can be saved with respect to its map

[ccp4bb] Off-topic question

2019-06-22 Thread khaja faisal tarique
Hi everyone, I was wondering can anyone suggest me how to project the primary sequence conservation calculated through the Consurf server. Any help or suggestion will be appreciated. I have pasted a figure from an article just for reference. Best Khaja [image: image.png]

Re: [ccp4bb] Help needed finding hit condition

2017-07-31 Thread khaja faisal tarique
Hello everyone. I remember the screen was again from Jenabioscience and this had happened with one of my protein. The screen was very old and the condition was peg3350, tris pH 8, lithium sulfate and NaCl as the salt. Hit was obtained which was never reproducible. Luckily I solved the structure