Re: [ccp4bb] 3D Structure Search

2018-02-16 Thread Briggs, David C
8:29:29 To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] 3D Structure Search Another topology-independent method is CLICK, available as a server here http://cospi.iiserpune.ac.in/click/ You might also want to try FATCAT which considers potential flexibility of separate subdomains in its structur

Re: [ccp4bb] 3D Structure Search

2018-02-16 Thread Daniel Rigden
Another topology-independent method is CLICK, available as a server here http://cospi.iiserpune.ac.in/click/ You might also want to try FATCAT which considers potential flexibility of separate subdomains in its structural alignment

Re: [ccp4bb] 3D Structure Search

2018-02-15 Thread Ethan A Merritt
On Thursday, February 15, 2018 3:16:50 PM PST Nicola Evans wrote: > I have recently solved a novel structure which previously did not have any > structural homologues (as related by sequence identity). I was wondering if > anyone could recommend a 3D structural search engine? I used the Dali

Re: [ccp4bb] 3D Structure Search

2018-02-15 Thread Tomas Malinauskas
Dear Nicola, PDBeFold is great too: http://www.ebi.ac.uk/msd-srv/ssm/ Best wishes, Tomas On Thu, Feb 15, 2018 at 11:16 PM, Nicola Evans wrote: > I have recently solved a novel structure which previously did not have any > structural homologues (as related by sequence

[ccp4bb] 3D Structure Search

2018-02-15 Thread Nicola Evans
I have recently solved a novel structure which previously did not have any structural homologues (as related by sequence identity). I was wondering if anyone could recommend a 3D structural search engine? I used the Dali server which has been recommended to me in the past (and with past