In the absence of a likely, more sensible, answer - I think the trick is/was to
simply put everything in one pir file, but link each sequence with a run of
20 or so alanines i.e. sequence A followed by ... sequence B
sequence C.
There may well be a more
Dear Tongqing,
On Apr 19, 2012, at 5:26 AM, Zhou, Tongqing (NIH/VRC) [E] wrote:
I am trying to use Arp/wArp to build an antibody-antigen complex with 1.65 A
data, there are three chains (heavy, light chains of antibody and the
antigen) in the complex, my question is how to put the sequences
.
**
-Original Message-
From: Antony Oliver [mailto:antony.oli...@sussex.ac.uk]
Sent: Thursday, April 19, 2012 11:57 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Arp/WARP for multi-chain complex
Thanks Victor - for giving a rational and detailed explanation. I
Dear All,
I am trying to use Arp/wArp to build an antibody-antigen complex with 1.65 A
data, there are three chains (heavy, light chains of antibody and the antigen)
in the complex, my question is how to put the sequences in the *.pir file so
that it still identifies different chains. It looks
