Re: [ccp4bb] CIF file problem

2023-04-22 Thread gabriele balducci
Hi > Does anybody know why I got this error message: > Checking for embedded fcf data in CIF ... > No extractable fcf data in found in CIF > as I uploaded the CIF file to https://checkcif.iucr.org/ > for structure validation? The CIF file was directly from

Re: [ccp4bb] CIF file problem

2023-04-20 Thread Ning Li
Thank you for the information. On Thu, Apr 20, 2023 at 5:14 PM Tim Gruene wrote: > Dear Ning, > their is some confusion. When a small molecule crystal structure is > determined, the coordinates and data are usually submitted to the CCDC > or the COD (crystallographic open database). The

Re: [ccp4bb] CIF file problem

2023-04-20 Thread Tim Gruene
Dear Ning, their is some confusion. When a small molecule crystal structure is determined, the coordinates and data are usually submitted to the CCDC or the COD (crystallographic open database). The structure receives a checkcif report which, as Phil has pointed out, is specific to small molecule

Re: [ccp4bb] CIF file problem

2023-04-20 Thread Ning Li
Hi Phil, Thank you for the clarification, I didn't realize the CheckCIF is for small molecules. We tried to submit the manuscript to a chemical magazine and found "CheckCIF reports must be submitted to the Cambridge Crystallographic Data Centre (CCDC) *prior to manuscript submission". In fact I

Re: [ccp4bb] CIF file problem

2023-04-20 Thread Phil Jeffrey
Hello Ning CheckCIF checks small molecule crystallographic cif files - the dictionaries and expectations on the contents are not the same as for mmcif, although the underlying syntax is the same. I'm unaware of anything that does the equivalent of CheckCIF for macromolecular cif files.

[ccp4bb] CIF file problem

2023-04-20 Thread Ning Li
Hi all, Does anybody know why I got this error message: *Checking for embedded fcf data in CIF ...* *No extractable fcf data in found in CIF* as I uploaded the CIF file to https://checkcif.iucr.org/ for structure validation? The CIF file was directly from phenix.refine during structure