Re: [ccp4bb] Displaying repeats in a amino acid sequence

2010-06-05 Thread Murray, James W
] Displaying repeats in a amino acid sequence Dear Klaus, would the SMART-Server (http://smart.embl-heidelberg.de/) be something you are looking for? If your repeats are long enough to make up domains it might. Tim On Fri, Jun 04, 2010 at 08:15:03PM +, Klaus Sengstack wrote: Dear all, I

Re: [ccp4bb] Displaying repeats in an amino acid sequence

2010-06-05 Thread Carlos Kikuti
Hi, there is a dot plot function in Geneious (www.geneious.com) that may be useful when the repeats are short. Carlos Kikuti Le 5 juin 10 à 01:00, CCP4BB automatic digest system a écrit : On Fri, Jun 04, 2010 at 08:15:03PM +, Klaus Sengstack wrote: Dear all, I am looking for an

Re: [ccp4bb] Displaying repeats in a amino acid sequence

2010-06-05 Thread Peter Artymiuk
Gruene [...@shelx.uni-ac.gwdg.de] Sent: Friday, June 04, 2010 11:09 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Displaying repeats in a amino acid sequence Dear Klaus, would the SMART-Server (http://smart.embl-heidelberg.de/) be something you are looking for? If your repeats are long

[ccp4bb] Displaying repeats in a amino acid sequence

2010-06-04 Thread Klaus Sengstack
Dear all, I am looking for an alignment program that is able to display repeating units in the sequence. In the C-terminus of my protein I found some specific repeats which I want to visualize.  Does anybody know such program? Thanks a lot. Best regards, K.Sengstack

Re: [ccp4bb] Displaying repeats in a amino acid sequence

2010-06-04 Thread Tim Gruene
Dear Klaus, would the SMART-Server (http://smart.embl-heidelberg.de/) be something you are looking for? If your repeats are long enough to make up domains it might. Tim On Fri, Jun 04, 2010 at 08:15:03PM +, Klaus Sengstack wrote: Dear all, I am looking for an alignment program that is