You can just set your default FreeR value to 1.
See the REFMAC gui etc..
Eleanor
Petra Lukacik wrote:
I have a mtz file (output from phenix AutoSol and AutoBuild) where the
FreeR flag for the test set has a value of 1 and and the working set
has value 0. This is opposite to the ccp4 default
I have a mtz file (output from phenix AutoSol and AutoBuild) where the
FreeR flag for the test set has a value of 1 and and the working set
has value 0. This is opposite to the ccp4 default where the FreeR set
used within refinement is flagged as 0. Is there a way to swap the two
around so
:[EMAIL PROTECTED] On Behalf Of Petra Lukacik
Sent: Thursday, September 27, 2007 12:03 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] FreeR flag value swap
I have a mtz file (output from phenix AutoSol and AutoBuild) where the
FreeR flag for the test set has a value of 1 and and the working set
has
Hi,
Just to explaine: it is assumed that if you came from using phenix
AutoSol and AutoBuild then for refinement you use phenix.refine
(refinement program in PHENIX). phenix.refine uses 1 for TEST and 0 for
WORK (similar to CNS). It is not clear to me at all why you need to do
the swap.
Biochemistry Building
Department of Biological Sciences
Imperial College London
London, SW7 2AZ
Tel: +44 (0)20 7594 5276
-Original Message-
From: CCP4 bulletin board on behalf of Petra Lukacik
Sent: Thu 27/09/2007 20:03
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] FreeR flag value swap
I have
Hi,
The assumption is hard to understand. We are thankful to the community who
are developing the great programs (and teaching), and with limited
experience, I think it is good to have choices. So, thanks also to people
who provide such scripts.
If we have to convert file formats, then whats
You are absolutely right. Although the idea in my message was that if
you are in certain environment and do something in that environment then
it's kind of natural to expect the output features are related to that
environment. Example? I wouldn't be very frustrated if CNS refuses to
read in
