[ccp4bb] Helix alignment and movement

2014-05-13 Thread R. M. Garavito
Dear Eugene and other CCP4ers The recent discussion about superposition has prompted me to ask about a different kind of superposition problem. We are working on a small dimeric protein that is entirely made up of helices. Instead of large, concerted domain movements, which I am quite

Re: [ccp4bb] Helix alignment and movement

2014-05-13 Thread Andrew Leslie
Dear Mike, I think that the old CCP4 superpose program used to be able to do this ? (This was a FORTRAN program, based on code from Wayne Hendrickson's PROLSQ program). With this program you specify one set of residues to do the alignment with and another set to do the