Re: [ccp4bb] Online server for generation of topology cartoons

2015-05-20 Thread Christian Roth
Dear Mohammad, there is for example pdbsum (www.ebi.ac.uk/pdbsum), where you can upload a pdb and you get various outputs including a topology diagram. Cheers Christian Am 20.05.2015 um 10:50 schrieb Mohammad Khan: Dear all, Is there any good online server for the generation of topology

[ccp4bb] Online server for generation of topology cartoons

2015-05-20 Thread Mohammad Khan
Dear all, Is there any good online server for the generation of topology cartoons of proteins, where one can have a clear layout of the various secondary structures? I have tried Pro-Origami, but however I am not veru happy with the output. I have used the default options. Maybe if someone can

Re: [ccp4bb] Online server for generation of topology cartoons

2015-05-20 Thread Mark J van Raaij
There are different servers and programs which I use as guides (TOPDRAW comes to mind), but for publication purposes I always end up drawing topology diagrams myself - for what I consider maximum clarity. It takes time, but I prefer to show things the way I think is best showing them, using the

Re: [ccp4bb] Online server for generation of topology cartoons

2015-05-20 Thread Mohammad Khan
Thanks for the suggestions! On Wed, May 20, 2015 at 6:21 PM, Mark J van Raaij mjvanra...@cnb.csic.es wrote: There are different servers and programs which I use as guides (TOPDRAW comes to mind), but for publication purposes I always end up drawing topology diagrams myself - for what I