Re: [ccp4bb] PDB secondary structure assignments

2013-07-04 Thread MARTYN SYMMONS
mjvanra...@cnb.csic.es To: CCP4BB@JISCMAIL.AC.UK Sent: Wednesday, 3 July 2013, 16:00 Subject: Re: [ccp4bb] PDB secondary structure assignments you are probably right, but the depositor can override the automatic secondary structure assignment by submitting his own. Perhaps this is what happened

[ccp4bb] PDB secondary structure assignments

2013-07-03 Thread Pavšič , Miha
Dear CCP4BB members, what is the usual practice regarding secondary structure assignments when preparing publication figures of protein structures and topology diagrams from deposited PDB files? The deposited PDB files already contain such assignments in the header section (using PROMOTIF?).

Re: [ccp4bb] PDB secondary structure assignments

2013-07-03 Thread Robbie Joosten
: Wednesday, July 03, 2013 16:01 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] PDB secondary structure assignments Dear CCP4BB members, what is the usual practice regarding secondary structure assignments when preparing publication figures of protein structures and topology diagrams from deposited

Re: [ccp4bb] PDB secondary structure assignments

2013-07-03 Thread Mark J van Raaij
, Robbie -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Pavšic, Miha Sent: Wednesday, July 03, 2013 16:01 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] PDB secondary structure assignments Dear CCP4BB members, what is the usual