You should type Dss into pymol and this will assign more appropriate secondary
structure
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of meisam
nosrati
Sent: Tuesday, 24 July 2012 9:47 a.m.
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Problem with making PDB from Coot
Seconday structure assignement by Pymol is poor and unreliable to say
the least. This behavior is very common. Best is to assign secondary
structure using other software and then tell Pymol explicitely from
where to where the starnds and helices run
Remy Loris
Vriej universiteit Brussel
On 2
On 23/07/12 22:46, meisam nosrati wrote:
Dear CCP4ers
It seems like the text has not showed up, but I have a problem with
making pdbs from coot. As I refine my structure ( with MR solution )
the beta sheets become loops while H-bondings are still there.
I am not sure, if the problem is origi
Dear CCP4ers
It seems like the text has not showed up, but I have a problem with making
pdbs from coot. As I refine my structure ( with MR solution ) the beta
sheets become loops while H-bondings are still there.
I am not sure, if the problem is originating from making PDBs from coot.
I will app
