[ccp4bb] Protein DNA complex refinement

2008-01-03 Thread Daouda TRAORE
Hi all, I'm trying to refine a protein DNA complex using Refmac. Unfortunately the job fails because of the definition of nucleosides : In the pdb file I use for molecular replacement (and it's the same for all protein-DNA complex I found in the PDB) nucleosides are labelled DG, DT, DA , DC. In

Re: [ccp4bb] Protein DNA complex refinement

2008-01-03 Thread William Scott
Also, the PDB now uses prime (') instead of asterisk (*) for the ribose numberings, and uses OP1 instead of O1P, and so forth. Do the new refmac dictionaries have that (I haven't been able to get it to work in the context of coot). Garib Murshudov wrote: If you take new dictionary with new