Re: [ccp4bb] docking program

2014-03-08 Thread Bärbel Blaum
Hi Careina, have a look at HADDOCK http://www.nmr.chem.uu.nl/haddock/ the group which developped it (Alexandre Bonvin's group in Utrecht) is associated with NMR rather than crystallography but HADDOCK can make use of all kinds of experimentally restraints, including those derived from

Re: [ccp4bb] docking program

2014-03-08 Thread Nancy Naguib
Hi Bärbel I was using a software named Argus lab and it was fine with me , usually i use to see the total free energy of the complex structure together with the bonds with the protein amino acids Greetings Nancy Sent from my iPhone On 8 Mar 2014, at 10:27 pm, Bärbel Blaum

[ccp4bb] docking program

2014-03-07 Thread Careina Edgooms
Can anyone recommend a good docking program to look at protein-DNA interactions?