Re: [ccp4bb] extra density on Cysteine

2007-08-14 Thread mesters
:* Monday, August 13, 2007 9:59 PM *To:* CCP4BB@JISCMAIL.AC.UK *Subject:* [ccp4bb] extra density on Cysteine Dear all, I am refining a 2.0A structure. I found that there were some extra density on two cysteines, even though I have added 5mM BME in the protein buffer. I am wondering whether

Re: [ccp4bb] extra density on Cysteine

2007-08-14 Thread Stephen Graham
2cystein.jpeg looks just like oxidation of cysteine to S-hydroxy-cysteine (a.k.a. cysteine sulfenic acid). I have seen this repeatedly in one of my structures (E. coli aminopeptidase P, see 1WL9 for an example). We discuss this a bit in Graham et al (2005) Biochemistry 44: 13820-36 - see Figure

Re: [ccp4bb] extra density on Cysteine

2007-08-13 Thread Artem Evdokimov
] extra density on Cysteine Dear all, I am refining a 2.0A structure. I found that there were some extra density on two cysteines, even though I have added 5mM BME in the protein buffer. I am wondering whether the first one (Cys292) is a bme and the second one is an oxidized cysteine. Any