Re: [ccp4bb] off topic: DSSP

2013-01-28 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear -- rashmi, if you would kindly let us know what exactly you are thanking for, you may actually have a reason for doing so - a good start is a cut-and-paste copy of the error message(s) from the terminal where you typed 'make' and 'make install'.

Re: [ccp4bb] off topic: DSSP

2013-01-28 Thread Jon Agirre
Dear Rashmi, you may want to try this web server instead of compiling installing it: http://www.cmbi.ru.nl/hsspsoap/ Otherwise, you'd better follow Tim's advice and give us more clues! Jon 2013/1/28 Tim Gruene t...@shelx.uni-ac.gwdg.de -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear

Re: [ccp4bb] off topic: DSSP

2013-01-28 Thread Antony Oliver
Sorry to cross-polluteā€¦ If you don't mind using the ksDSSP implementation, it is already installed with the phenix suite if you have it. phenix.ksdssp from the command line. With regards, Tony. --- Dr Antony W Oliver Senior Research Fellow CR-UK DNA Repair Enzymes Group Genome Damage and

Re: [ccp4bb] off topic: DSSP

2013-01-28 Thread Nat Echols
On Mon, Jan 28, 2013 at 8:04 AM, Antony Oliver antony.oli...@sussex.ac.uk wrote: If you don't mind using the ksDSSP implementation, it is already installed with the phenix suite if you have it. Correct, but although the method is supposed to be the same, the output is not, and there are bugs

Re: [ccp4bb] off topic: DSSP

2013-01-28 Thread Robbie Joosten
@JISCMAIL.AC.UK Subject: Re: [ccp4bb] off topic: DSSP On Mon, Jan 28, 2013 at 8:04 AM, Antony Oliver antony.oli...@sussex.ac.uk wrote: If you don't mind using the ksDSSP implementation, it is already installed with the phenix suite if you have it. Correct, but although the method is supposed

Re: [ccp4bb] off topic: DSSP

2013-01-28 Thread Nat Echols
On Mon, Jan 28, 2013 at 8:39 AM, Robbie Joosten robbie_joos...@hotmail.com wrote: DSSP recently went open source with a very liberal license. So you can consider using the real DSSP now. This may also be the moment to integrate DSSP in CCP4. Based on the info here:

[ccp4bb] FW: [ccp4bb] off topic: DSSP

2013-01-26 Thread Robbie Joosten
Onderwerp: FW: [ccp4bb] off topic: DSSP Hoi Maarten, Enig idee? Groetjes, Robbie Sent from my Windows Phone From: Rashmi Panigrahi Sent: 2013-01-26 10:11 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] off topic: DSSP Hi All Apologies for the off topic. Could some one