example:
applying 0.50 0.50 -0.69 Y,-X,3/4+Z to chain A
applying 1.50 0.50 0.61 X,Y,Z to chain B
WARNING: ./input.pdb chain B is on a different origin!
I used origin.com to superimpose two models.
Now I hope you get the insight of my problem. Do you have any idea to
solve
this problem?
Rega
; -- Ian
>>>>
>>>> On Thu, Nov 18, 2010 at 10:55 AM, Rojan Shrestha
>>>> wrote:
>>>>>
>>>>> Hello Ian:
>>>>>
>>>>> I am afraid that whether my problem is not clear to you.
>>>>>
>>
ying 1.50 0.50 0.61 X,Y,Z to chain B
WARNING: ./input.pdb chain B is on a different origin!
I used origin.com to superimpose two models.
Now I hope you get the insight of my problem. Do you have any idea to
solve
this problem?
Regards,
Rojan
-----Original Message-----
From: Ian Tickle
up using symmetric operator, for one copies it used
>>> one
>>> origin and for next, another origin is used. So there is origins shift
>>> problem.
>>>
>>> Here is an example:
>>> applying 0.50 0.50 -0.69 Y,-X,3/4+Z to chain A
>>> applying 1
t origin!
I used origin.com to superimpose two models.
Now I hope you get the insight of my problem. Do you have any idea to solve
this problem?
Regards,
Rojan
-Original Message-
From: Ian Tickle [mailto:ianj...@gmail.com]
Sent: Thursday, November 18, 2010 7:42 PM
To: ro...@riken.jp
Cc:
@jiscmail.ac.uk
Cc: ro...@riken.jp
Subject: Re: [ccp4bb] origin_shift in polar space group
Ah, looks like you are running one of my scripts! Although I called it
"origins.com", not "origin.com". Someone must have renamed the file at some
point.
I have a newer (aka better) version of i
> origin and for next, another origin is used. So there is origins shift
> > problem.
> >
> > Here is an example:
> > applying 0.50 0.50 -0.69 Y,-X,3/4+Z to chain A
> > applying 1.50 0.50 0.61 X,Y,Z to chain B
> > WARNING: ./input.pdb chain B is on a differe
problem?
>
>
> Regards,
>
> Rojan
>
>
> -Original Message-
> From: Ian Tickle [mailto:ianj...@gmail.com]
> Sent: Thursday, November 18, 2010 7:42 PM
> To: ro...@riken.jp
> Cc: CCP4BB@jiscmail.ac.uk
> Subject: Re: [ccp4bb] origin_shift in polar space group
&
If you want to shift the coordinates, just use a superposition program.
If you want to know the exact shift to best match phases you need to CAD
together phases calculated from each model, then use PhaseComparison
(reflection utility) That will tell you the shft, and whether there is
an allowe
HI Rojan,
I'm not entirely clear that there is a problem. After superposition
any origin shift that may have been present is removed: doesn't that
solve your problem?
Cheers
-- Ian
On Thu, Nov 18, 2010 at 10:11 AM, Rojan Shrestha wrote:
> Hello:
>
>
>
> In polar space group when the two or mo
Hello:
In polar space group when the two or more copies molecules are superimposed,
the origin is shifted.
Does anybody have the solution to tackle this problem?
Regards,
Rojan
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