Re: [ccp4bb] rigid flexible analysis

2017-01-29 Thread van den Bedem, Henry
lt;CCP4BB@JISCMAIL.AC.UK> on behalf of Gauri Misra <kamga...@gmail.com> Reply-To: Gauri Misra <kamga...@gmail.com> Date: Tuesday, January 24, 2017 at 3:46 AM To: "CCP4BB@JISCMAIL.AC.UK" <CCP4BB@JISCMAIL.AC.UK> Subject: [ccp4bb] rigid flexible analysis Hi everyone! I would

Re: [ccp4bb] rigid flexible analysis

2017-01-24 Thread Pavel Afonine
Hi, can't you infer this from refined atomic displacement parameters (ADPs; also knowns as B-factors)? Or run a 100 or so SA refinement jobs, each starting with a different random seed. This will generate an ensemble of models with some atoms occupying more conserved positions than the others.

[ccp4bb] rigid flexible analysis

2017-01-24 Thread Gauri Misra
Hi everyone! I would like to know the current online servers available for analyzing the rigid and flexible regions of proteins.Looking forward for precious inputs from the community. Sincerely, Dr. Gauri Misra Assistant Professor Amity Institute of Biotechnology Amity University Noida (U.P.)