Re: [ccp4bb] skewness in a good EM map?

2023-11-07 Thread Robert Daniel Oeffner
Thanks for the replies and the links with more information. Robert To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to

Re: [ccp4bb] skewness in a good EM map?

2023-11-07 Thread Pavel Afonine
Hi Rob, the fundamental property of crystallographic or cryo-em maps -- the presence of high density points -- is what skewness depicts. So I can't see why the idea of using skewness to quantify maps would be any different for x-ray vs cryo-em. I've just downloaded a cryo-EM map for this (PDB: 8d3y

Re: [ccp4bb] skewness in a good EM map?

2023-11-07 Thread Guillaume Gaullier
_ From: CCP4 bulletin board on behalf of Robert Oeffner Sent: Tuesday, November 7, 2023 2:56:44 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] skewness in a good EM map? Hi, In crystallography one of the features of a good map is that the histogram of map values has skewness. Does this als

[ccp4bb] skewness in a good EM map?

2023-11-07 Thread Robert Oeffner
Hi, In crystallography one of the features of a good map is that the histogram of map values has skewness. Does this also apply to EM maps? Whereas X-ray maps depicts the electron density EM maps depicts the electrostatic potential as I understand it. Any pointers about skewness or not in EM ma