Tillmann,
I've added a jiffy script to synthesize pseudo-precession photos from a
rotation dataset, to the latest PHENIX package. We build this package
nightly, so any PHENIX bundle with a version number greater than
dev-402 will workhowever I see that dev-402 is not yet on the
public
... only in the [0kl] plane. ...
I'm sure you've already checked, but if during data collection the [0kl]
axis was nearly perpendicular to the rotation axis, then you may only have
to superimpose (with ipdisp) few suitably selected images to obtain a
small (low resolution) portion of what you
Hi,
I have problems solving the structure of a protein crystal which seems to be
disordered. In order to investigate the disorder it would be useful to have a
precision photograph that shows reflections only in the [0kl] plane. Does
anyone know software that can transform raw data to give
hklview will generate pseudo precession images
Sent from my iPhone
On 05/05/2010, at 11:03 PM, Tillmann Heinisch tillmann.heini...@unibas.ch
wrote:
Hi,
I have problems solving the structure of a protein crystal which
seems to be disordered. In order to investigate the disorder it
would
to my knowledge hklview just works with integrated data whereas I need to plot
raw intensities along h, k and l to investigate reflection streakings. I heard
such software is routinely used in small molecule crystallography.
Tillmann
On May 5, 2010, at 3:18 PM, David Briggs wrote:
Hi
Hi Tillmann,
what do you mean by 'raw intensities' as opposed to integrated data?
Would xprep be an option for you? It reads XDS_ASCII.HKL, but that's of course
after integration.
But it should be easy to convert any (non-binary) file containing raw
intensities into an hkl-file that you can read
I think he's looking for a program which will extract a plane from the raw 3D
reciprocal space, as sampled by the raw images (ie before integration, but with
the plane defined by the indexed lattice). That's a much harder job
Phil
On 5 May 2010, at 16:50, Tim Gruene wrote:
Hi Tillmann,
what
As Phil says, constructing an undistorted slice through reciprocal space
is much harder than displaying integrated intensities. The Bruker APEX2
software does this nicely and I understand that they can also convert
MAR CCD and possibly some other frame formats to Bruker format, which
presumably
Hi
this is what I thought. I would imagine that you'd want to combine the
2D information in the X-ray images in a dataset into a 3D solid
figure, then look at slices through this for the RL projection you
were interested in. If you indexed the dataset first you should be
able to get the
to...
Marcus Winter.
(Oxford Diffraction Ltd.)
-Original Message-
From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of
George M. Sheldrick
Sent: 05 May 2010 17:20
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] software to represent raw reflections in hkl zones
Storing a complete 3D image set in memory is moderately challenging even for
today's computers (probably several to several 10s of gigabytes, though you
could perhaps cheat a bit), so programs would probably have to use
old-fashioned double sort techniques to extract a zone. I wonder how the
I wrote a little jiffy for doing this some years ago:
http://bl831.als.lbl.gov/~jamesh/pickup/adsc2pdb.com
However, I should note that this program relies on the DPS program:
dps_peaksearch to pick spots on each image in your data set. These
spots are then transformed into reciprocal space
Tillmann,
I wrote a little jiffy some months ago, to go from raw images to a
pseudo-precession photo, in the context of labelit.index. I'll dig it
out and post a link to the program...
Nick
Tillmann Heinisch wrote:
Hi,
I have problems solving the structure of a protein crystal which
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