As you know Paul I would like COOT to output a list of peaks into a
"coordinate " file..
You can do it laboriously by hand using Add atom at peak position but that
gets tedious...
Eleanor
On Thu, 10 Jun 2021 at 22:14, Edward A. Berry wrote:
> On 06/10/2021 11:19 AM, James Holton wrote:
> >
> >
On 06/10/2021 11:19 AM, James Holton wrote:
I'm afraid the only bash command I know is: "tcsh"
I learned csh by studying "elves"
To unsubscribe from the CCP4BB list, click the following link:
Many thanks, James, for the tips. This one worked also,
peakmax MAPIN "mymap.ccp4" XYZOUT "mypeaks_output.pdb" <<- EOF
EOF
Best regards,
On Thu, Jun 10, 2021 at 5:19 PM James Holton wrote:
>
> I'm afraid the only bash command I know is: "tcsh"
>
> However, in addition to suggestions so
On Thu, Jun 10, 2021 at 08:19:01AM -0700, James Holton wrote:
> I'm afraid the only bash command I know is: "tcsh"
I'm using the exact opposite direction ;-)
To everyone using "echo" (interactively and/or in scripts): be careful
which command is picked up at any given point. There are
I'm afraid the only bash command I know is: "tcsh"
However, in addition to suggestions so far, I expect this will work:
echo "" | peakmax MAPIN "myfile.ccp4" XYZOUT "myfiles_omit_atom.pdb"
Your peakmax is waiting for options to come in on "standard input". The
vertical bar "|" is a "pipe"
b
>
> should work as well
>
>
>
> Thierry
>
>
>
> *From:* CCP4 bulletin board * On Behalf Of *Philip
> D. Jeffrey
> *Sent:* Tuesday, June 8, 2021 2:16 PM
> *To:* CCP4BB@JISCMAIL.AC.UK
> *Subject:* Re: [ccp4bb] Problem with peakmax
>
>
&g
END” | peakmax MAPIN
> myfile.ccp4 XYZOUT myfiles_omit_atom.pdb
> should work as well
>
> Thierry
>
> From: CCP4 bulletin board On Behalf Of Philip D.
> Jeffrey
> Sent: Tuesday, June 8, 2021 2:16 PM
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: Re: [ccp4bb] Problem with peak
CCP4BB@JISCMAIL.AC.UK>
mailto:CCP4BB@JISCMAIL.AC.UK>>
Subject: Re: [ccp4bb] Problem with peakmax
Thanks Paul,
Is it possible to add Ctrl-D to my bash script?
Best regards,
On Tue, Jun 8, 2021 at 8:03 PM Mohamed Ibrahim
mailto:mohamed.ibra...@hu-berlin.de>> wrote:
Thanks Paul,
Is it poss
that's what works for me in Csh. Bash proselytizers will correct
> me as necessary...
>
> Phil Jeffrey
> Princeton
>
> --
> *From:* CCP4 bulletin board on behalf of Mohamed
> Ibrahim
> *Sent:* Tuesday, June 8, 2021 2:06 PM
> *To:* CC
nceton
From: CCP4 bulletin board on behalf of Mohamed Ibrahim
Sent: Tuesday, June 8, 2021 2:06 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Problem with peakmax
Thanks Paul,
Is it possible to add Ctrl-D to my bash script?
Best regards,
On Tue, Jun 8, 2021 at 8:03 PM Mohamed I
Thanks Paul,
Is it possible to add Ctrl-D to my bash script?
Best regards,
On Tue, Jun 8, 2021 at 8:03 PM Mohamed Ibrahim
wrote:
> Thanks Paul,
> Is it possible to add Ctrl-D to my bash script?
>
> Best regards,
>
> On Tue, Jun 8, 2021 at 7:51 PM Paul Emsley
> wrote:
>
>> On Tue, 2021-06-08
On Tue, 2021-06-08 at 19:34 +0200, Mohamed Ibrahim wrote:
>
> I am trying to get the peak values from omit maps. The peakmax from the GUI
> works fine. However, I tried to run
> peakmax from the terminal, and it stuck when returning P1. Same map file
> works fine, when I use the GUI. Any ideas,
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