Dear All :
I have installed CCP4 6.1 on a linux box. Everything seems to be OK. When
I try to run CCP4i I got the following error :
/usr/local/ccp4_6.1/tcltk++/bin/bltwish: error while loading shared
libraries: libtk8.4.so: cannot open shared object file: No such file or
directory
It looks that
Dear Francisco,
Is this directory in your load library path? I assume not, given your error,
which suggests you need to source the ccp4-others.setup from setup-scripts file
appropriate for your shell - this sets up the paths etc. for everthing which is
not actually ccp4.
Best wishes,
Graeme
Albert Guskov wrote:
Dear all,
I've installed coot with fink, everything works fine, except the fact
I can not solve results of my work (that makes it totally senseless
;-))
The error I get is Gtk-WARNING **: Unable to find default local
directory monitor type
Could someone point me out what is
Dear all,
I am thinking of getting a apple Mac pro desktop computer. I was
wondering does all crystallography programs run on it? I think there
are Mac OSX version of CCP4, CNS, SHELX etc. But how about programs in
the Uppsala software factory etc?. Also is it difficult to install
these
Dear all,
I've installed coot with fink, everything works fine, except the fact
I can not solve results of my work (that makes it totally senseless
;-))
The error I get is Gtk-WARNING **: Unable to find default local
directory monitor type
Could someone point me out what is wrong?
Kind regards,
Hi Sheemei.
The majority of crystallography programs run under osx, including the
Uppsala software factory stuff.
Installation has always been very straight forward for me.
Bill Scott's webpages will have everything you need to get started.
http://sage.ucsc.edu/xtal/
Cheers,
David
2009/1/6
POSTDOCTORAL POSITION IN X-RAY CRYSTALLOGRAPHY AT CEA SACLAY
Position Description: The department of molecular engineering of proteins
(SIMOPRO)
CEA Saclay, near Paris, France (Head of the Department: Vincent DIVE) has
an immediate career opportunity for a highly motivated and experienced
Hi Sheemel,
I assume you are waiting for today's announcements of the i7 core
MacPro's ? If not wait another 6 hours before deciding to buy something.
Jürgen
On 6 Jan 2009, at 06:27, Sheemei wrote:
Dear all,
I am thinking of getting a apple Mac pro desktop computer. I was
wondering does
I just see the mail, I'd try my best to solve this problem.
Maybe I'll try the web server later.
Thanks for Dr.Long, Dr Zwart and all the people here.
Xiang Liu
the fourth year Ph.D candidate
lab of structural biology, college of life science
Peking University, Beijing, P.R.China
100871
Dear all,
When you calculate the electrostatic potential surface for a protein,
what is the best way to treat
charged residues with disordered or partially ordered side-chains, e.g.
surface lysines? Do you just treat them as alanines?
Thanks,
Joe
I was much more enticed by the proposition of the MacBook Wheel:
http://www.theonion.com/content/video/apple_introduces_revolutionary
Get your orders in now - there's reportedly a 3-15 month waiting time...
Derek ;-)
On Jan 6, 2009, week2, at 13:14, JBosch wrote:
Hi Sheemel,
I assume you
Dear All,
We are currently working on a structure of apparent P21 symmetry which
has been solved by molecular replacement. The data are to 2.7Å but the
Rfree will not drop below 30%. The density is clear for the model we
have, however there is extra density that suggests a shift of the
We are offering RapiData 2009, the eleventh offering of our popular course:
Rapid Data Collection and Structure Solving at the NSLS: A Practical
Course in Macromolecular X-Ray Diffraction Measurement
The course will be held 19-24 April 2009. Students could be at any level from
The Mac Pro is what I use for all my crystallography calculations. The
vast majority of programs run, the one major sticking point being the
older version of HKL but I believe that HKL2000 may well run on OSX now.
I use XDS and/or MOSFLM if I want to reprocess on this machine.
With most
A senior research scientist position is available at the Marine Biological
Laboratory in Woods Hole MA to continue our study on the crystal structures
of blood coagulation proteins, particularly Factor VIII (Structure.
2008;16:597-606). This is the protein missing in hemophilia. The candidate
with Unix on the Mac. There are also options for virtualization of
Windoze and Linux via the software Parallels although I have yet to test
this out.
If you're trying to purchase a Mac so that you can run MS Office or
other Windows only products without dual booting this is no longer
Hi
I use Parallels on my Mac at home for both Windows XP and Ubuntu - it
works fine for me when running the more number-crunching parts of CCP4
- haven't really looked at graphics programs like Coot MG.
At work I'm running VMWare (Workstation 6.0.0) on a Linux box for
Vista, and that,
I've heard anecdotal evidence that VMWare Fusion is better,
but I've only used the Linux version.
As a heavy user of both products under Mac OS X on an eight-core Mac
Pro, I find VMWare to be far more robust and feature rich than
Parallels. Regardless, only Parallels supports 3D OpenGL
There are also options for virtualization of Windoze and Linux via the
software Parallels although I have yet to test this out.
Parallels is okay; I only use it for testing GUI code on Linux. It doesn't
support multiple processors, which probably isn't necessary for most people.
The
On Tuesday 06 January 2009 08:35:19 Stephen Hare wrote:
Dear All,
We are currently working on a structure of apparent P21 symmetry which
has been solved by molecular replacement. The data are to 2.7Å but the
Rfree will not drop below 30%. The density is clear for the model we
have,
I assume you are waiting for today's announcements of the i7 core
MacPro's ? If not wait another 6 hours before deciding to buy something.
hrmm, I was hoping store.apple.com was down due to modifications for
this new item, it's back up but no new i7 mac pro ..
Hi everyone
I've been trying to run the new imosflm version from ccp4i 6.1.0 gui on ubuntu
8.0.4, but keep having problems. After struggling with it to search for the
correct MOSDIR directory path, it then complained it was missing several
packages from wish8.4. I did manage to find some of
The ActiveTcl distribution can be installed anywhere, eg /opt
Then point imosflm to the wish binary in that.
William G. Scott
(via iPod and gmail -- forgive the typos and brevity)
Please reply to wgsc...@chemistry.ucsc.edu
On Jan 6, 2009, at 3:03 PM, Salgado, Paula
p.salg...@imperial.ac.uk
Hi Paula:
Here is more info:
http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/CCP4-6.1.0_on_Ubuntu_Ibex
(There is no reason why you would have to do step 1.)
Sorry, but I couldn't figure out how to append the link using my iPod
while undergoing mind-numbing boredom in an interminable
On Jan 6, 2009, at 7:10 PM, William Scott wrote:
(There is no reason why you would have to do step 1.)
Sorry, that should have been no reason ... to do step THREE.
This is an interesting case but your description lacked the diffraction part.
Assuming no Heavy Atom sites in the native structure. Based on your
description, another possibility may be Lattice Translocation.
-
Ref: J. Wang, S. Kamtekar, A. J. Berman and T. A. Steitz.
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