Re: [ccp4bb] Spam:Re: [ccp4bb] Align linux version

2013-11-11 Thread Boaz Shaanan
Hi Jeroen, Indeed, I did write to the original poster about this, asking him if he really meant Gerson Cohen's align program in his post, in which case I would be happy to send it to him. I still have the linux version but, as others have pointed out, there are new kids on the block

[ccp4bb] Senior Scientist / Group leader Position (tenure-track); Institute of Biochemistry, Biocenter, Goethe-University Frankfurt

2013-11-11 Thread Martin Pos
Dear all, I am posting an advertisement for a tenure-track group leader position for structural biology on membrane proteins on behalf of Prof. Dr. Robert Tampé, Institute of Biochemistry, Biocenter, Goethe-University Frankfurt. Please reply to mailto:applicat...@biochem.uni-frankfurt.de

[ccp4bb] Postdoctoral Position – EMBL Heidelberg

2013-11-11 Thread Christoph Mueller
Dear Colleagues, A Postdoctoral position is available in the group of Christoph Müller, EMBL Heidelberg, Germany to structurally and functionally characterize multi-protein complexes involved in RNA polymerase I transcription using the combination of X-ray crystallography, electron microscopy

[ccp4bb] molprobity

2013-11-11 Thread SD Y
Hi, I was wondering if molprobity server is down (http://molprobity.biochem.duke.edu/index.php) or its just my files or our network has problem because I cant upload my files (some times it gave error). ThanksSDY

[ccp4bb] molprobity

2013-11-11 Thread Tanner, John J.
I encountered the same problem last night. The server won't upload the PDB file. I didn't check this morning. On Nov 11, 2013, at 10:02 AM, SD Y wrote: Hi, I was wondering if molprobity server is down (http://molprobity.biochem.duke.edu/index.php) or its just my files or our network has

[ccp4bb] Cyro cooling system

2013-11-11 Thread Uday Kumar
Hello We are planning to buy a small cryo cooling unit for protein crystal cooling which can manage 100 K temp. we are limited with space and only small units like Oxford cryosystem Desktop cooler or any of that dimensions can fit. Does anybody has some suggestions in this regard. Would be

Re: [ccp4bb] Cyro cooling system

2013-11-11 Thread Mark van der Woerd
Hi Uday, I would simply ask Oxford for advice, I have never regretted asking them (or most others) for advice. On their web site it is written that the Desktop Cooler only goes down to 170K, so that will not do, I don't think. In fact, they only make two suggestions when you go through their

Re: [ccp4bb] molprobity

2013-11-11 Thread SD Y
It works now. Thanks for fixing. Sincerely,SDY Date: Mon, 11 Nov 2013 16:13:52 + From: tanne...@missouri.edu Subject: [ccp4bb] molprobity To: CCP4BB@JISCMAIL.AC.UK I encountered the same problem last night. The server won't upload the PDB file. I didn't check this morning. On

[ccp4bb] lib32gfortran3 needed for 64-bit ccp4?

2013-11-11 Thread Roger Rowlett
Just ran into an error running SORTMTZ in CCP4-6.4.0. Looks like SORTMTZ requires libgfortran.so.3 32-bit version. I get an error message of the missing library if I do not install lib32gfortran3 (32-bit fortran libraries). Should this still be necessary for the 64-bit CCP4? I'll keep this

Re: [ccp4bb] help on preparing EM map for mask generation and molecular replacement

2013-11-11 Thread Viswanathan Chandrasekaran
Hi Fei: I once had the same error message when using an EM map as an MR model. To make this work, you need to change your map's axis order from XYZ to whatever is appropriate (in my case it was ZXY) and also change the spacegroup to P1 using the CCP4 program maputils. In the CCP4i GUI, you do

Re: [ccp4bb] help on preparing EM map for mask generation and molecular replacement

2013-11-11 Thread Edward A. Berry
You may also have to change your grid for the fft (resampling in photoshop parlance). From the sfall documentation: Different spacegroups have special requirements for factorisation. No prime factors higher than 19 are permitted (The `atom map' generated on this grid has the asymmetric

Re: [ccp4bb] Align linux version

2013-11-11 Thread Dyda
Please correct me if I'm wrong, but I think lsqman implements G. Cohen's operator improvement in DP_improve. Assuming of course if that was the reason why someone wanted to use align. Fred *** Fred Dyda, Ph.D.

Re: [ccp4bb] lib32gfortran3 needed for 64-bit ccp4?

2013-11-11 Thread Marcin Wojdyr
On Mon, Nov 11, 2013 at 03:15:46PM -0500, Roger Rowlett wrote: Just ran into an error running SORTMTZ in CCP4-6.4.0. Looks like SORTMTZ requires libgfortran.so.3 32-bit version. I get an error message of the missing library if I do not install lib32gfortran3 (32-bit fortran libraries). Should

[ccp4bb] Beamline scientist position at SLS

2013-11-11 Thread Meitian Wang
Please find the link to the advertised BLS position http://www.psi.ch/pa/offenestellen/0601-1. Beamline Scientist Protein Crystallography Beamlines at SLS Your tasks As a beamline scientist you will join a team effort to operate, maintain and develop protein crystallography beamlines at the