Re: [ccp4bb] How to compare between electron density maps?

phenix.match_maps can overlay model B and map B onto model A and map A. A and B can be any symmetry and box (unit cell) dimensions. Model A and map A stay in its original frame of reference. Let me know should you have questions. Pavel On Mon, May 11, 2020 at 3:19 PM Murpholino Peligro wrote:

[ccp4bb] CryoEM Research Scientist Position at Vertex Pharmaceuticals

Hello All, Vertex Pharmaceuticals is seeking a highly motivated and experienced Cryo Electron Microscopy (CryoEM) Data Scientist to join our San Diego Protein Sciences team. The individual will develop and implement state-of-the-art algorithms and methods to optimize and improve current CryoEM

Re: [ccp4bb] How to compare between electron density maps?

Hello, you certainly could normalise maps (i.e. have a map of (density minus average)/rms) with mapman in the Uppsala suite and you can ask Phenix to make the electron electron density normalised when it generates a map (set "map scaling" to "sigma"). The web suggests you can do it with XDLmapman,

[ccp4bb] How to compare between electron density maps?

I want to compare electron density features of map A from protein A and map B from protein B... Because each map has a different rmsd level... ...what is the best way to compare electron density between maps? Is there a way to normalize maps or something like that? Thanks

[ccp4bb] NSLS II is accepting Rapid Access Proposals for COVID-19 related research

Dear All Hope that you and your family are doing well, NSLS-II is offering a streamlined and expedited rapid access proposal process for groups that require beam time for structural biology projects directly related to COVID-19. The Center for Biomolecular

[ccp4bb] Online Course on Neutron Scattering Applications in Structural Biology

ORNL Online Course on Neutron Scattering Applications in Structural Biology (https://conference.sns.gov/event/217/) June 1 - June 5, 2020 2:00 pm - 5:30 pm EST Registration (free) is now open and will close May 17, 2020. This online course is designed for graduate students, post-doctoral

[ccp4bb] Call for Microscope Time Proposals at the Stanford-SLAC Cryo-EM Center (S2C2)

June 1, 2020 is the next deadline for submitting proposals for microscope time at the Stanford-SLAC Cryo-EM Center (S2C2). Additional electron cryo-microscope capacity is in place at our facility. We hope to resume regular user operations in June in a phased approach beginning with remote

[ccp4bb] Fw: DIALS error

From: Demou, Maria Sent: Monday, May 11, 2020 3:33 PM To: matthew.rodrig...@diamond.ac.uk Subject: Re: DIALS error I believe the expected unit cell is 222 212121, space group P1. I tried increasing the max cell but still no results..

Re: [ccp4bb] DIALS error

Dear Maria, The files 3_experiments,expt and 3_reflections.refl nust be inside the directory dui_files created by dui warmest regards, Luiso. From: CCP4 bulletin board on behalf of Winter, Graeme (DLSLtd,RAL,LSCI) Sent: 11 May 2020 14:58 To:

Re: [ccp4bb] DIALS error

Dear Maria Please could you send (off list) the 3_experiments,expt and 3_reflections.refl files? Happy to take a look. I expect it’s related to your experiment geometry (beam centre or similar) Thanks Graeme On 11 May 2020, at 14:22, Demou, Maria mailto:maria.demou...@ucl.ac.uk>> wrote:

[ccp4bb] Multiple Postdoctoral Fellowships available at the “Multiscale Research Institute for Complex Systems” at Fudan University of Shanghai

The Multiscale Research Institute for Complex Systems (MRICS) at Fudan University is located at the Zhangjiang Campus of Fudan University and is supported by the Shanghai High-level Talents Program. MRICS is strongly committed to the development of novel and effective multi-scale imaging