Re: [ccp4bb] ipmosflm
Hi Eric You need to make sure g77 is properly installed on your system. For any FC system, if you install g77 from an RPM (e.g. see your FC install DVD/CD/website) you should get this file in the right place. If you don't want the whole compiler there, you should be able to get round this on an FC system by just installing the libg2c.so file explicitly, perhaps from an RPM. It may be that the correct file is on your system, but either called something else (similar, e.g. libg2c.so.0) and not linked correctly to libg2c.so, or it isn't in your LD_LIBRARY_PATH; on my systems it's in the directory /usr/lib (on others it's found in /usr/local/lib). I've put a copy on the Mosflm v 7.0.1 pre-built site (I haven't put a link on the page for it, but you can get it by following this - http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver701/pre-built/suse-libg2c.so Personally, I really hate shared objects and have tried (oh, how I've tried!) to eliminate them from Mosflm distributions, but they seem to sneak in when I'm not looking... Hi, I try to install the latest version of ipmosflm and the small display version on my laptop (fedora 7). I got the following error message when I try to run it: $./mosflm_linux_suse_SD mosflm_linux_suse_SD: error while loading shared libraries: libg2c.so.0: cannot open shared object file: No such file or directory It might not related to the program. However, please advise. Thx. Eric Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 2QH
[ccp4bb] Stereo setting in program O with stereo-ready graphic card in x86_64
Dear all: I try to install program O in x86_64 linux machine with stereo-ready graphic card. When I try to use stereo (setenv STEREO on), I get the following message. No dials Stereo enabled, hit F1 Gamepad disabled freeglut (lin_ono): ERROR: Internal error Visual with necessary capabilities not found in function fgOpenWindow X Error of failed request: BadWindow (invalid Window parameter) Major opcode of failed request: 4 (X_DestroyWindow) Resource id in failed request: 0x0 Serial number of failed request: 16 Current serial number in output stream: 19 I guess it is due to the setting of X-window. Could you advise me? Thanks in advance. -- Sincerely yours, Lin-Woo Kang, Ph.D. Assistant professor Konkuk university Dept. of advanced technology fusion Tel) 82-2-450-4090 E-mail) [EMAIL PROTECTED]
Re: [ccp4bb] ipmosflm
FYI: I am using ipmosflm/imosflm on Fedora Core 7. My notes for FC7 install say to make sure that you have the following installed: compat-libstdc++-33 compat-libstdc++-296 compat-gcc-34 compat-gcc-34-c++ compat-gcc-34-g77 You can use yum install compat-libstdc++-33 to install each of the libraries above. -Anand -Original Message- From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Harry Powell Sent: Sunday, September 02, 2007 12:43 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] ipmosflm Hi Eric You need to make sure g77 is properly installed on your system. For any FC system, if you install g77 from an RPM (e.g. see your FC install DVD/CD/website) you should get this file in the right place. If you don't want the whole compiler there, you should be able to get round this on an FC system by just installing the libg2c.so file explicitly, perhaps from an RPM. It may be that the correct file is on your system, but either called something else (similar, e.g. libg2c.so.0) and not linked correctly to libg2c.so, or it isn't in your LD_LIBRARY_PATH; on my systems it's in the directory /usr/lib (on others it's found in /usr/local/lib). I've put a copy on the Mosflm v 7.0.1 pre-built site (I haven't put a link on the page for it, but you can get it by following this - http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver701/pre-built/suse-libg2c.so Personally, I really hate shared objects and have tried (oh, how I've tried!) to eliminate them from Mosflm distributions, but they seem to sneak in when I'm not looking... Hi, I try to install the latest version of ipmosflm and the small display version on my laptop (fedora 7). I got the following error message when I try to run it: $./mosflm_linux_suse_SD mosflm_linux_suse_SD: error while loading shared libraries: libg2c.so.0: cannot open shared object file: No such file or directory It might not related to the program. However, please advise. Thx. Eric Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 2QH
Re: [ccp4bb] Stereo setting in program O with stereo-ready graphic card in x86_64
Hi, there is an O-info mailing list, which you may find useful. I had problems with the composite extension to the X.org X server in recent Linux distributions. Perhaps you are using Fedora Core 6 or Ubuntu Edgy? If so, this thread has more information: http://imsb.au.dk/pipermail/o-info/2007-February/008218.html I hope this helps, Mark On 02/09/07, linwoo kang [EMAIL PROTECTED] wrote: Dear all: I try to install program O in x86_64 linux machine with stereo-ready graphic card. When I try to use stereo (setenv STEREO on), I get the following message. No dials Stereo enabled, hit F1 Gamepad disabled freeglut (lin_ono): ERROR: Internal error Visual with necessary capabilities not found in function fgOpenWindow X Error of failed request: BadWindow (invalid Window parameter) Major opcode of failed request: 4 (X_DestroyWindow) Resource id in failed request: 0x0 Serial number of failed request: 16 Current serial number in output stream: 19 I guess it is due to the setting of X-window. Could you advise me? Thanks in advance. -- Sincerely yours, Lin-Woo Kang, Ph.D. Assistant professor Konkuk university Dept. of advanced technology fusion Tel) 82-2-450-4090 E-mail) [EMAIL PROTECTED] -- Mark BROOKS Telephone: 0169157968 Fax: 0169853715 INSTITUT de BIOCHIMIE et de BIOPHYSIQUE MOLECULAIRE et CELLULAIRE UMR8619 - Bât 430 - Université de Paris-Sud 91405 ORSAY CEDEX
Re: [ccp4bb] ipmosflm
Thanks for all the responses. I choose the simplest way of all your suggestions by installing the library compat-gcc-34-g77 using yum on Fedora 7. Problem solved! imosflm is running. Cheers, Eric On 9/2/07, Anand Kolatkar [EMAIL PROTECTED] wrote: FYI: I am using ipmosflm/imosflm on Fedora Core 7. My notes for FC7 install say to make sure that you have the following installed: compat-libstdc++-33 compat-libstdc++-296 compat-gcc-34 compat-gcc-34-c++ compat-gcc-34-g77 You can use yum install compat-libstdc++-33 to install each of the libraries above. -Anand -Original Message- From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Harry Powell Sent: Sunday, September 02, 2007 12:43 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] ipmosflm Hi Eric You need to make sure g77 is properly installed on your system. For any FC system, if you install g77 from an RPM (e.g. see your FC install DVD/CD/website) you should get this file in the right place. If you don't want the whole compiler there, you should be able to get round this on an FC system by just installing the libg2c.so file explicitly, perhaps from an RPM. It may be that the correct file is on your system, but either called something else (similar, e.g. libg2c.so.0) and not linked correctly to libg2c.so, or it isn't in your LD_LIBRARY_PATH; on my systems it's in the directory /usr/lib (on others it's found in /usr/local/lib). I've put a copy on the Mosflm v 7.0.1 pre-built site (I haven't put a link on the page for it, but you can get it by following this - http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver701/pre-built/suse-libg2c.so Personally, I really hate shared objects and have tried (oh, how I've tried!) to eliminate them from Mosflm distributions, but they seem to sneak in when I'm not looking... Hi, I try to install the latest version of ipmosflm and the small display version on my laptop (fedora 7). I got the following error message when I try to run it: $./mosflm_linux_suse_SD mosflm_linux_suse_SD: error while loading shared libraries: libg2c.so.0: cannot open shared object file: No such file or directory It might not related to the program. However, please advise. Thx. Eric Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 2QH
[ccp4bb] Tenured position University of Auckland
Lecturer in Structural Biology (A618-07L) School of Biological Sciences, Faculty of Science The School of Biological Sciences invites applications for a tenured position as Lecturer in the area of Structural Biology LocationAuckland Term of ContractPermanent Closing Date15 September 2007 Position Overview Applications are invited for a tenured position as Lecturer in Structural Biology. Applicants should have state-of-the-art skills and a publication record in structural biology, preferably in X-ray crystallography. The School of Biological Sciences hosts a modern fully equipped X-ray crystallography laboratory, including crystallization robotics, as well as facilities for cryo-electron microscopy, access to high-field NMR, and access to synchrotron data collection. The Structural Biology laboratory is also part of the Maurice Wilkins Centre for Molecular Biodiscovery, a national Centre of Research Excellence (www.mauricewilkinscentre.org). This offers collaborative opportunities in proteomics, cell biology and immunology, medicinal and synthetic chemistry and advanced biological modelling. The appointee is expected to develop an internationally competitive research programme in structural biology, able to attract external research funding and graduate students. Collaboration with other staff is encouraged, and the appointee is also expected to participate in the School?s undergraduate and graduate teaching programmes. The School of Biological Sciences currently employs 180 staff and supervises 120 PhD students. The School has modern laboratories and operates state-of-the-art equipment centres for genomics, proteomics, mass spectrometry and molecular structure determination (see SBS web site: http://www.sbs.auckland.ac.nz/). The University is situated in the heart of Auckland, a modern lively city with a beautiful harbour and beaches, a warm climate and easy access to many outdoor activities. Job Description Purpose Statement To undertake high quality teaching and research in the School Responsible To Director of the School Key Accountability AreasTEACHING Undertake undergraduate and postgraduate teaching as required by the Director. Supervise and assess student work. RESEARCH Initiate and undertake research in your area of expertise. Submit research-funding applications to appropriate bodies. Disseminate knowledge through scholarly research activities and publications. Participate in conferences to advance research interests. Supervise graduate students? research. Work collaboratively with colleagues. ADMINISTRATION Undertake administration of paper(s). Participate in University/School committees. Adhere to the rules and regulations of the University. Comply with the University?s obligation regarding equal employment opportunities and the Treaty of Waitangi. Person Specification Qualifications PhD Experience Candidates must have experience as a postdoctoral researcher in structural biology and must have published in refereed international journals. Attributes and Skills Candidates must have a robust knowledge of modern molecular techniques applicable to structure research. They must be experienced in the technical and computational aspects of protein structure determination. --- This mail sent through University of Auckland http://www.auckland.ac.nz
