Re: [ccp4bb] Can DM-skeletonisation specify the join point cutoff value?

2011-03-20 Thread Tim Gruene
Dear Hailiang, Don't know whether this suits your needs and it does not answer your question, but the program O by Alwyn Jones is rather famous for its sophisticated skeletonisation. Maybe it does what you need. Cheers, Tim On Sat, Mar 19, 2011 at 09:42:25PM -0400, Hailiang Zhang wrote: Hi

[ccp4bb] step refine speed of wincoot

2011-03-20 Thread Xiaopeng Hu
Dear all, I found the step refine speed of wincoot is much slower than that of linux coot (with the same pc). Is it normal or I need to configure something with the wincoot? best, Xiaopeng Hu

Re: [ccp4bb] step refine speed of wincoot

2011-03-20 Thread Paul Emsley
On 03/20/2011 01:22 PM, Xiaopeng Hu wrote: Dear all, I found the step refine speed of wincoot is much slower than that of linux coot (with the same pc). Is it normal or I need to configure something with the wincoot? There are a number of things that might explain this, for example 1)

Re: [ccp4bb] step refine speed of wincoot

2011-03-20 Thread Bernhard C. Lohkamp
Dear all, I found the step refine speed of wincoot is much slower than that of linux coot (with the same pc). Is it normal or I need to configure something with the wincoot? There are a number of things that might explain this, for example 1) You linux system is intrinsically faster

[ccp4bb] silly question on coot defaults

2011-03-20 Thread Phoebe Rice
I'm allergic to red nitrogens and blue oxygens, and I'm tired of changing the default way new files are colored every time I restart coot (I know it save the whole previous session, but sometimes I don't want to see that set of molecules again). I must be missing a way to save the preferred

Re: [ccp4bb] silly question on coot defaults

2011-03-20 Thread Paul Emsley
On 03/20/2011 09:58 PM, Phoebe Rice wrote: I'm allergic to red nitrogens and blue oxygens, Me too. and I'm tired of changing the default way new files are colored every time I restart coot Yes, me too. I must be missing a way to save the preferred defaults? Section 4.4 Atom

Re: [ccp4bb] silly question on coot defaults

2011-03-20 Thread Bernhard C. Lohkamp
Section 4.4 Atom Colouring http://lmb.bioch.ox.ac.uk/coot/doc/coot/Atom-Colouring.html i.e. add to your ~/.coot file | (set-colour-map-rotation-on-read-pdb-c-only-flag 1)| Or use the preferences (only in newer pre-release versions): Edit-Preferences-Bonds-Bond Colours tick the box: