Re: [ccp4bb] Space group choice with respect to physical plausability

2012-09-24 Thread Edwin Pozharski
On 09/24/2012 07:09 AM, Harm Otten wrote: Why is it so hard to break the symmetry for two (seemingly) different monomers? Because it's present in your data? In P1, do you still have the electron density that suggests the overlap (it's not entirely clear to me what you mean by that - a

[ccp4bb] Beamtime available now at CHESS

2012-09-24 Thread Marian Szebenyi
Beamtime is currently available for the fall 2012 run, now through November 19, at the Cornell High Energy Synchrotron Source (CHESS, in Ithaca NY). The facility offers: Monochromatic stations A1 and F1, at 12.7 and 13.5 KeV, with ADSC CCD detectors, ALS-style crystal automounters,

[ccp4bb] [OT]: Purification in ArcticExpress

2012-09-24 Thread Katherine Sippel
Hi All, I've recently swapped over to expression in the ArcticExpress(DE3) cells for a particularly rock-like protein. I've got soluble expression but I'm having the issue of Cpn60 (the overexpressed chaperonin) piggybacking along with the tagged protein. Google-fu and the CCP4bb archives

Re: [ccp4bb] [OT]: Purification in ArcticExpress

2012-09-24 Thread Cynthia Kinsland
Incubation with MgCl2/ATP/KCl facilitates the release of the Cpn60. See: R. E. Joseph; A. H. Andreotti, Protein Expr. Purif. 2008, 60, 194–197. Best, Cynthia __ Cynthia Kinsland, Ph. D. Director, Protein Production Facility Cornell University B78 ST Olin

Re: [ccp4bb] Space group choice with respect to physical plausability

2012-09-24 Thread Herman . Schreuder
Dear Harm, As Edwin pointed out, there might not be any non-crystallographic symmetry to break, because it is crystallographic. While it is clear that no two N-terminii can be in the same electron density at the same moment, there is no reason why this symmetry-breaking should happen in a

Re: [ccp4bb] [OT]: Purification in ArcticExpress

2012-09-24 Thread Toufic El Arnaout
Hi Katherine, Maybe you can try some useful ideas for your case listed in this study: Protein Expr Purif. 2007 April; 52(2): 280–285. Effect of Osmotic Stress and Heat Shock in Recombinant Protein Overexpression and Crystallization. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1865119/ Best wishes

[ccp4bb] Off-topic: Pore-forming Substances

2012-09-24 Thread Jacob Keller
Dear Crystallographers: #off topic I am trying to calibrate some microscopic imaging intracellular pH measurements, but the usual nigericin (small pore-forming K+/H+ exchanger) technique does not seem to be working well. Maybe it actually never works well? Anyway, I was think of trying to use

[ccp4bb] Ammonium sulfate precipitation of protein in denaturing conditions

2012-09-24 Thread Koyeli Pramanik
 Hi All, My protein can be solubilized in 8M Urea or detergents. Could anyone suggest me whether ammonium sulfate precipitation of my desired protein works good for denaturing conditions? Thanks a lot for your help! Regards, Koyeli

Re: [ccp4bb] Ammonium sulfate precipitation of protein in denaturing conditions

2012-09-24 Thread Roger Rowlett
Off the top, I don't know the answer to this, but will note that ammonium sulfate and urea have opposite effects on protein solubility and water structure. Urea is a chaotrope that reduces the strength of the hydrophobic effect--hence promoting protein unfolding. Ammonium sulfate is a