Hi,
I'm trying to do sequence alignments that are generated using PDB files as
the sequence source so are often missing residues with the sequence. Is
there any way to run BLAST (or related server - not a local program) that
accepts wildcards so I can keep the numbering in the resulting alignment
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Dear ,
does it obstruct your intention if you used the actual sequence of the
crystallised molecule? It is usually available through the PDB and
often in the SEQRES section of the pdb file itself. As far as I
understand this would be a work-around
Dear Colleagues,
There is no way to write a context-free grammar for STAR or CIF that
will work correctly at the character stream level, because of the special
overlapping uses of whitespace in the quoting mechanism. Once you
either assume a tokenizer to deal with this before the grammar sees
