Re: [ccp4bb] Phasing with Many Monomers/AU

2014-01-19 Thread Frank von Delft
Wasn't there this huge thread just 3 days ago on heavy atom soaking On 19/01/2014 07:18, Felix Frolow wrote: Francis, It can happened We have (not yet published) P1 with 24 molecules. When we cut His-tag we get P1 with 32 molecules. In our case we believe it is dictated by very strong

[ccp4bb] Sequence for pBS24Ub

2014-01-19 Thread Marko Hyvonen
Apologies for a marginally out of topic request, but would anyone have the complete DNA sequence for pBS24Ub vector? Any format will do, and even a close derivative of it would be useful. Published in Sabin et al, Nature Biotechnology 7, 705 - 709 (1989)

Re: [ccp4bb] Phasing with Many Monomers/AU

2014-01-19 Thread Chris Fage
Thank you all for your responses. I already have a few ideas about how to approach the problem. One of my concerns with so monomers per asymmetric unit at lower resolution was the failure of MR software. Neither PHENIX nor Phaser MR have made progress. I am fairly new to anomalous methods, having

Re: [ccp4bb] Phasing with Many Monomers/AU

2014-01-19 Thread Francis Reyes
Chris, On Jan 19, 2014, at 11:30 AM, Chris Fage cdf...@gmail.com wrote: Thank you all for your responses. I already have a few ideas about how to approach the problem. One of my concerns with so monomers per asymmetric unit at lower resolution was the failure of MR software. Neither

Re: [ccp4bb] How to show the ligands (both as sticks and sphere) as shown here in Pymol

2014-01-19 Thread Bosch, Juergen
Hi Wei, make two objects of your ligand, display one as sphere and the other as stick. Then change the transparency setting for the spheres. Jürgen On Jan 19, 2014, at 11:40 PM, Wei Shi wei.shi...@gmail.commailto:wei.shi...@gmail.com wrote: Hi all, Please see attached Fig where they show the

Re: [ccp4bb] How to show the ligands (both as sticks and sphere) as shown here in Pymol

2014-01-19 Thread Noinaj, Nicholas (NIH/NIDDK) [E]
Wei, Actually the representations from your example look more like transparent surface and stick representations of the ligand. This can be accomplished a few ways, but if you want independent coloring schemes for each representation, then you will have to do as Jurgen suggestedcreating