Re: [ccp4bb] Structure comparison

2017-04-09 Thread Gert Vriend
Arthur Lesk (at Penn state Univ, I think)m is the only one I know who has worked on this topic. I suggest you ask him. The topic you elude to is commonly known as the Russian Doll Effect. If you want to discuss the topic, feel free to Skype me. Greetings Gert Vriend On 10-4-2017 1:37, Reza

Re: [ccp4bb] Structure comparison

2017-04-09 Thread Reza Khayat
Hi, My initial e-mail may have been a bit vague so I'll try to be more specific. Superposing the structures and comparing them against one another, while appropriate, is a subjective way to do the analysis as I would have to subjectively define a threshold that would indicate a difference

[ccp4bb] Structure comparison

2017-04-09 Thread Reza Khayat
Hi, I have refined several structures of a protein from different space groups and would like to compare them to one another. Is there a program/software suite that would provide an objective comparison of the structures and identify regions where the structures are sufficiently different from