Re: [ccp4bb] wwpdb validation

[Pavel Afonine]

Phenix has its own way to do it which is "Comprehensive validation"
available from the GUI. This includes validation of model, data and
model-to-data fit. It is data-specific: there is one for crystallography
(X-ray or neutron) and one for Cryo-EM. For best results, you need the
latest version from nightly builds. Hope "wwpdb validation pipeline" is
something along the same lines, or close at least.
All the best,
Pavel

On Fri, Jul 27, 2018 at 9:24 AM, wtempel  wrote:

> Hi,
> did I hear correctly that the wwpdb validation pipeline can be accessed
> from within ccp4 and/or phenix? If so, how does one access that
> functionality in either software suite?
> Many thanks.
> Wolfram Tempel
>
> --
>
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[ccp4bb] Postdoctoral position in Structural Microbiology (Montreal, Canada)

[Calmettes, Charles]

A postdoctoral position is open in my lab at the Institut Armand-Frappier in 
Montreal. Please see details below for more Information:



Postdoctoral Fellowship in Structural Microbiology



Project description: A postdoctoral position is available in the research group 
of Assistant Prof. Charles Calmettes at the Centre INRS-Institut Armand 
Frappier in Laval (Greater Montreal, Canada) to work on a 5-years CIHR funded 
project. For this position we are looking for a talented, highly skilled, and 
motivated postdoc with a proven track record in the areas of structural biology 
and protein biochemistry. The successful candidate is expected to dissect the 
structure and function of bacterial proteins (membrane and soluble proteins) 
identified as potential new drug targets, using a combination of X-ray 
crystallography and biochemical techniques. The research project is a follow up 
study from our article entitled “Global landscape of cell envelope protein 
complexes in Escherichia 
coli”, recently published in 
Nature Biotechnology (2018).



The applicant must have a PhD in a relevant field, such as protein 
biochemistry, biophysics, membrane protein, or structural biology. Preference 
will be given to candidate with protein expression and purification skills, and 
with a solid knowledge in protein characterization and biophysical methods. 
Experience in X-ray crystallography is preferred but not mandatory. The 
applicant will be an enthusiastic scientist who demonstrates excellence, 
creativity, commitment to research, and effective communication skills. The 
Centre INRS-Institut Armand Frappier offers a French/English bilingual 
environment.



Salary range: To be eligible applicants must have completed their PhD degrees 
within the last 3 years. The salary range for the position is $40,000 to 
$50,000 per year.



Starting date: Review of applications begins immediately and will continue 
until the position is filled. Send your CV and a cover letter in PDF to 
charles.calmet...@iaf.inrs.ca. Successful 
candidates will be notified for interviews. Anticipated  starting date is 
October 2018.



Institution: INRS–Institut Armand-Frappier Research 
Center,
 is a university dedicated to fundamental and applied research in the field of 
infectious diseases, immunity, and pharmaco-chemistry.



Questions? Pr Charles Calmettes, Ph.D.

E-mail :   charles.calmet...@iaf.inrs.ca

Lab page:http://ccalmettes.profs.inrs.ca/(English)

 http://www.inrs.ca/charles-calmettes(French)




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[ccp4bb] wwpdb validation

[wtempel]

Hi,
did I hear correctly that the wwpdb validation pipeline can be accessed
from within ccp4 and/or phenix? If so, how does one access that
functionality in either software suite?
Many thanks.
Wolfram Tempel



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[ccp4bb] Membrane protein structural biology posts in Liz Carpenter's group at the SGC, Oxford

[Liz Carpenter]

Dear All,

We have three positions available for membrane protein structural biologists at 
the SGC in Oxford in Prof. Liz Carpenter's lab:


1.   Membrane protein structural biology, pipeline and methods development 
position (closing date 23rd August)

2.   Structural biology of human ion channels and ABC transporters (closing 
date 23rd August)

3.   Structural biology of human ion channels, as part of a collaboration 
with Pharma (closing date 13th August)

The third post would involve work  both in Oxford and Biberach in Germany


The group studies human integral membrane proteins involved in genetic disease. 
We work with geneticists to identify genes that are involved in 
neuropsychiatry, cancer, rare and metabolic disease and inflammatory diseases.
We aim to produce protein, assays and structures,  as well as small molecule 
and protein binders. Through this work we aim to understand the role of these 
proteins in disease and thus promote the development of novel therapies.
We use both crystallography and electron cryo-microscopy for structure 
determination. The SGC and the University of Oxford provide an excellent 
working environment, with access to world class facilities for all structural 
biology, biochemical and biophysical studies.

Please follow the links below for more information:


1.   Structural biology, pipeline and methods development position (closing 
date: 23rd August, interviews during the week starting the 3rd September):
https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_version_4.display_form?p_company=10_internal_external=E_display_in_irish=N_process_type=_applicant_no=_form_profile_detail=_display_apply_ind=Y_refresh_search=Y_recruitment_id=136109


2.   Structural biology of human ion channels and ABC transporters(closing 
date: 23rd August, interviews during the week starting the 3rd September):
https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_version_4.display_form?p_company=10_internal_external=E_display_in_irish=N_process_type=_applicant_no=_form_profile_detail=_display_apply_ind=Y_refresh_search=Y_recruitment_id=135995


3.   Structural biology of human ion channels, as part of a collaboration 
with Boehringer Ingelheim (closing date: 13th August):
https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_details_form.jobspec?p_id=135499



If you have an questions about these posts please get in touch with me 
(liz.carpen...@sgc.ox.ac.uk).



With best wishes,

Liz Carpenter



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