Dear Reza,
CD hit will do exactly that.
Cheers,
Georg
Sent from my iPhone
On Jan 3, 2019, at 2:41 PM, Reza Khayat
mailto:rkha...@ccny.cuny.edu>> wrote:
Hi,
Happy new year to all! A bit of an off topic question. Does anyone know of a
method/program to extract the most distinct "n"
Hi Reza, happy new year!
The choice would depend on your alignment (aminoacid or nucleotides? are
the sequences closely or distantly related? is it a large alignment? are
there many gaps?)... Anyway, I think the safest, unbiased way to determine
a group of outliers might be to compute a
On Thursday, January 3, 2019 12:40:05 PM PST Reza Khayat wrote:
> ?Hi,
>
>
> Happy new year to all! A bit of an off topic question. Does anyone know of
> a method/program to extract the most distinct "n" (n>2) sequences from a
> sequence alignment? Thanks.
If these putative "most distinct"
PCA?
On Jan 3, 2019, at 3:41 PM, Reza Khayat
mailto:rkha...@ccny.cuny.edu>> wrote:
Hi,
Happy new year to all! A bit of an off topic question. Does anyone know of a
method/program to extract the most distinct "n" (n>2) sequences from a sequence
alignment? Thanks.
Best wishes,
Reza
?Hi,
Happy new year to all! A bit of an off topic question. Does anyone know of a
method/program to extract the most distinct "n" (n>2) sequences from a sequence
alignment? Thanks.
Best wishes,
Reza
Reza Khayat, PhD
Assistant Professor
City College of New York
Department of Chemistry
Dear all,
We are pleased to announce that registration is now open for the fifth annual
CCP-EM Spring Symposium. Sign up on the event website before 25 January for an
Early Bird discount:
http://www.cvent.com/d/xbqsqk
The Spring Symposium aims to provide a forum to highlight state of the art
I have long thought about developing an open-source crystallization robot
based on the now ubiquitous 3D printing linear motion systems. They are
certainly plenty precise for doing crystallization plating. Probably having
two heads, a 12-channel syringe system for screen dispensing and a second
I think any decision depends on the resolution of your two data sets. If
they are very different I would choose the higher resolution one.
If that is the Anom data then I would use the anom signal at least in the
first cycles to improve the phases..
Eleanor
On Thu, 3 Jan 2019 at 14:59, Piotr
A career opportunity if you want to pivot your structure Biology experience for
something new.Check out this job: Protein Antibody Engineer
https://www.linkedin.com/jobs/view/1031138315
To unsubscribe from the CCP4BB list,
The opentron liquid handler is currently in what I would consider an alpha
stage of development in both hardware and software, when compared to more
expensive liquid handlers produced by companies like tecan, hamilton,
agilent, etc. It is considerably less useful due to the lack of software
Dear CCP4 experts,
I'd like to ask your opinion about using anomalous signal in refinement of
crystal structures in addition to using high resolution native data.
I am working on a series of structures for which I have collected two data
sets (from the same crystal):
1 - native with higher
Dear Colleagues,
We are pleased to announce the 12th annual CCP4 crystallographic school “From
data collection to structure refinement and beyond” will be held on June 17-24,
2019 at Advanced Photon Source (APS), Argonne National Laboratory (ANL), near
Chicago, Illinois, USA. All details can
I, for one, was very happy to see Marin’s remark, which pointed something
everyone is shoving under the rug.
By far the most significant source for information to US citizens is FOX news,
which is pay rolled to brainwash as many as they reach. Even public television
and NPR have been hammered
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