Re: [ccp4bb] SeMet data

2019-08-27 Thread Nukri Sanishvili
Hi Lindsey, As I mentioned to you in the separate email, 180 degrees for each half is too little. Here I'll try to explain some more about SAD vs. MAD: What I have observed at our beamlines is that the majority of those who collect MAD data, do it as as an afterthought of SAD. Priority in these

Re: [ccp4bb] SeMet data

2019-08-27 Thread Ivan Shabalin
Hi Lindsey, My couple cents: 1) Make sure to use "Auto-corrections" option for scaling with HKL. This option is great for extracting the anomalous signal. 2) Im also with Andreas and Nukri on collecting 360 at lower dose and leaving the inverse beam for later. Best, Ivan With best

[ccp4bb] Announcement: 11th International Workshop on Radiation Damage to Biological Samples

2019-08-27 Thread Dworkowski Florian (PSI)
The 11th International Workshop on Radiation Damage to Biological Samples will be held at the PSI, Switzerland from lunchtime 25th to lunchtime 27th of March, 2020. The Workshop will address essential questions and challenges of radiation damage to biological samples during their examination

Re: [ccp4bb] SEC and MALS

2019-08-27 Thread arjen jakobi
Dear Natesh, as Petri pointed out this is a common behavior for proteins/protein complexes that deviate substantially from a "globular" shape. It is very typical for elongated proteins/protein complexes containing e.g. extended coiled-coil regions. These samples will elute much earlier from a SEC

Re: [ccp4bb] SEC and MALS

2019-08-27 Thread Rajiv gandhi.s
Because MALS can capture distinct migrant form of the same protein, sometimes protein with disorder and elongated structure behave differently in SEC. In SEC we can't distinguish them. Whereas MALS have scattering at three different angles, by that we can captures those multiple forms of the

Re: [ccp4bb] SeMet data

2019-08-27 Thread Andreas Förster
Dear Lindsey, I'm all with Nukri on this one. 12 Se atoms (whose incorporation you've shown) should be plenty to give you enough anomalous signal to phase the data and solve the structure. That's why I would do the simplest experiment first. Collect 360° of data at the peak energy, maybe a bit

[ccp4bb] Senior Scientist Structural Biology GPCR's

2019-08-27 Thread L. Raats
Senior Scientist Structural Biology GPCR's Based in a Belgian Biotechnology company To strengthen the capabilities of their Structural Biology group, they are looking for a Senior Scientist Structural Biology under the leadership of a GPCR expert in the field. You will be part of

Re: [ccp4bb] SEC and MALS

2019-08-27 Thread Petri Kursula
Hi, that's typical behaviour for an elongated/disordered molecule, given that SEC separates based on hydrodynamic radius, not MW. Petri Petri Kursula -- Professor -- Department of Biomedicine University of Bergen, Norway http://www.uib.no/en/rg/petrikursula

Re: [ccp4bb] SEC and MALS

2019-08-27 Thread Susan Lea
What do you mean by mass from SEC? SEC is not a mass determination method Sent from my iPhone On 27 Aug 2019, at 06:57, Natesh Ramanathan mailto:nat...@iisertvm.ac.in>> wrote: Dear Friends, Can you share your experience with examples of MALS giving lower molecular weight (Eg.

Re: [ccp4bb] SEC and MALS

2019-08-27 Thread David Briggs
Natesh, Did you use an experimentally determined dn/dc value? Is it a glycoprotein, or does it have some other modification? Default dn/dc values are not appropriate for glycoproteins, and will give rise to incorrect Mwt values. Dave -- Dr David C. Briggs Senior Laboratory Research Scientist