[ccp4bb] Industrial Position of Biophysics/Biochemistry Scientist at Kymera Therapeutics

2021-02-20 Thread Xin Huang 
Dear All,

We are looking for a Senior Scientist with strong background in 
biophysical/biochemical assays to join our Lead Discovery group in the greater 
Boston area to advance the exciting field of Targeted Protein Degradation.  
Please apply at https://www.kymeratx.com/careers/?gh_jid=4304726003/. 
Best regards,
Xin



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Re: [ccp4bb] Linux Distro for setting up workstations - Is CentOS still a good choice?

2021-02-20 Thread Robbie Joosten 
Big fan of Ubuntu here. The Long Term Support versions work very well and 
everything you need is on them. At the same time Debian tends to be less 
conservative that the Red Had universe which typically makes it easier to get 
modern things running. Also the Ubuntu on WSL (Windows) is a lifesaver and is 
really easy to use.

We are bringing more and more of our software the Debian repository. It makes 
it much easier to deploy. 

Cheers,
Robbie

> -Original Message-
> From: CCP4 bulletin board  On Behalf Of Tim
> Gruene
> Sent: Saturday, February 20, 2021 16:36
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: Re: [ccp4bb] Linux Distro for setting up workstations - Is CentOS 
> still
> a good choice?
> 
> Hi Matthias,
> 
> I have been using Debian for more than a decade. Every stable release is
> supported for at least 5 years.
> Many crystallographic libraries and some programs are part of the standard
> repository, like raster3d, pymol, shelxle, libccp4, libclipper, ...
> 
> Debian is particularly stable, and requires little maintenance.
> 
> Cheers,
> Tim
> 
> On Fri, 19 Feb 2021 21:35:46 +0100
> Matthias Zeug  wrote:
> 
> > Hi all,
> >
> >
> >
> > I just came across the (already quite old) news that Red-Hat switches
> > their support-policy for CentOS to a rolling preview model (replacing
> > CentOS Linux by CentOS Stream):
> >
> > https://www.zdnet.com/article/why-red-hat-dumped-centos-for-centos-
> str
> > eam/
> >
> > https://www.enterpriseai.news/2021/01/22/red-hats-disruption-of-centos
> > -unlea
> > shes-storm-of-dissent/
> >
> >
> >
> > I wondered if that has any implications for the community, as
> > scientific programs - maybe except the big ones like coot, Phenix, and
> > ccp4 - are often not *that* well maintained for an extended period. I
> > had the impression CentOS was liked especially for its
> > "unbreakability,"  and it seems to be the main developing platform for
> > some widely used smaller programs (e.g., adxv).
> >
> >
> >
> > Do you think it would be advisable to switch to a Ubuntu-distro when
> > setting up new workstations in the future, or is it safe to stick to
> > CentOS?
> >
> >
> >
> > Please let me know what you think :-)
> >
> >
> >
> > Best,
> >
> >
> >
> > Matthias
> >
> >
> >
> >
> >
> > Matthias Zeug
> >
> > Buchmann Institute of Molecular Life Sciences
> >
> > Goethe University Frankfurt
> >
> >
> >
> >
> >
> ###
> ###
> > ##
> >
> > To unsubscribe from the CCP4BB list, click the following link:
> > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
> >
> > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a
> > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are
> > available at https://www.jiscmail.ac.uk/policyandsecurity/
> 
> 
> 
> --
> --
> Tim Gruene
> Head of the Centre for X-ray Structure Analysis Faculty of Chemistry
> University of Vienna
> 
> Phone: +43-1-4277-70202
> 
> GPG Key ID = A46BEE1A
> 
> ###
> #
> 
> To unsubscribe from the CCP4BB list, click the following link:
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> 
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> https://www.jiscmail.ac.uk/policyandsecurity/



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Re: [ccp4bb] Linux Distro for setting up workstations - Is CentOS still a good choice?

2021-02-20 Thread Peat, Tom (Manufacturing, Parkville) 
Speaking of Linux, but somewhat tangential to the thread:
Ubuntu has recently released their newest version 20.04 (Focal Fossa).
Has anyone implemented this and is there anything that doesn't work? Any 
gotchas that one might want to be aware of?

Cheers, tom

Tom Peat, PhD
Proteins Group
Biomedical Program, CSIRO
343 Royal Parade
Parkville, VIC, 3052
+613 9662 7304
+614 57 539 419
tom.p...@csiro.au


From: CCP4 bulletin board on behalf of Tim Gruene
Sent: Sunday, February 21, 2021 2:35 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Linux Distro for setting up workstations - Is CentOS 
still a good choice?

Hi Matthias,

I have been using Debian for more than a decade. Every stable release
is supported for at least 5 years.
Many crystallographic libraries and some programs are part of the
standard repository, like raster3d, pymol, shelxle, libccp4,
libclipper, ...

Debian is particularly stable, and requires little maintenance.

Cheers,
Tim

On Fri, 19 Feb 2021 21:35:46 +0100
Matthias Zeug  wrote:

> Hi all,
>
>
>
> I just came across the (already quite old) news that Red-Hat switches
> their support-policy for CentOS to a rolling preview model (replacing
> CentOS Linux by CentOS Stream):
>
> https://www.zdnet.com/article/why-red-hat-dumped-centos-for-centos-stream/
>
> https://www.enterpriseai.news/2021/01/22/red-hats-disruption-of-centos-unlea
> shes-storm-of-dissent/
>
>
>
> I wondered if that has any implications for the community, as
> scientific programs - maybe except the big ones like coot, Phenix,
> and ccp4 - are often not *that* well maintained for an extended
> period. I had the impression CentOS was liked especially for its
> "unbreakability,"  and it seems to be the main developing platform
> for some widely used smaller programs (e.g., adxv).
>
>
>
> Do you think it would be advisable to switch to a Ubuntu-distro when
> setting up new workstations in the future, or is it safe to stick to
> CentOS?
>
>
>
> Please let me know what you think :-)
>
>
>
> Best,
>
>
>
> Matthias
>
>
>
>
>
> Matthias Zeug
>
> Buchmann Institute of Molecular Life Sciences
>
> Goethe University Frankfurt
>
>
>
>
> 
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
>
> This message was issued to members of 
> www.jiscmail.ac.uk/CCP4BB, a
> mailing list hosted by www.jiscmail.ac.uk, terms & 
> conditions are
> available at https://www.jiscmail.ac.uk/policyandsecurity/



--
--
Tim Gruene
Head of the Centre for X-ray Structure Analysis
Faculty of Chemistry
University of Vienna

Phone: +43-1-4277-70202

GPG Key ID = A46BEE1A



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Re: [ccp4bb] Linux Distro for setting up workstations - Is CentOS still a good choice?

2021-02-20 Thread Christine Gee 
Hi all,

We use Debian and SBGRID. We have coot and pymol running in stereo with 3D 
vision glasses. 
If that’s helpful. 

Regards
Christine. 

Sent from my iPad

> On Feb 20, 2021, at 7:57 AM, Paul Emsley  wrote:
> 
> FWIW, looks like somebody at ETH Zurich is (or had been) trying to bring 
> Coot into the OS:
> 
> http://phd-sid.ethz.ch/debian/coot/coot-0.9.2/
> 
> Hello! Let me know if I can help.
> 
> Paul.
> 
> 
>> On 20/02/2021 15:35, Tim Gruene wrote:
>> Hi Matthias,
>> 
>> I have been using Debian for more than a decade. Every stable release
>> is supported for at least 5 years.
>> Many crystallographic libraries and some programs are part of the
>> standard repository, like raster3d, pymol, shelxle, libccp4,
>> libclipper, ...
>> 
>> Debian is particularly stable, and requires little maintenance.
>> 
>> Cheers,
>> Tim
>> 
>> On Fri, 19 Feb 2021 21:35:46 +0100
>> Matthias Zeug  wrote:
>> 
>>> Hi all,
>>> 
>>> 
>>> 
>>> I just came across the (already quite old) news that Red-Hat switches
>>> their support-policy for CentOS to a rolling preview model (replacing
>>> CentOS Linux by CentOS Stream):
>>> 
>>> https://www.zdnet.com/article/why-red-hat-dumped-centos-for-centos-stream/
>>> 
>>> https://www.enterpriseai.news/2021/01/22/red-hats-disruption-of-centos-unlea
>>> shes-storm-of-dissent/
>>> 
>>> 
>>> 
>>> I wondered if that has any implications for the community, as
>>> scientific programs - maybe except the big ones like coot, Phenix,
>>> and ccp4 - are often not *that* well maintained for an extended
>>> period. I had the impression CentOS was liked especially for its
>>> "unbreakability,"  and it seems to be the main developing platform
>>> for some widely used smaller programs (e.g., adxv).
>>> 
>>> 
>>> 
>>> Do you think it would be advisable to switch to a Ubuntu-distro when
>>> setting up new workstations in the future, or is it safe to stick to
>>> CentOS?
>>> 
>>> 
>>> 
>>> Please let me know what you think :-)
>>> 
>>> 
>>> 
>>> Best,
>>> 
>>> 
>>> 
>>> Matthias
>>> 
>>> 
>>> 
>>> 
>>> 
>>> Matthias Zeug
>>> 
>>> Buchmann Institute of Molecular Life Sciences
>>> 
>>> Goethe University Frankfurt
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> To unsubscribe from the CCP4BB list, click the following link:
>>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
>>> 
>>> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a
>>> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are
>>> available at https://www.jiscmail.ac.uk/policyandsecurity/
>> 
>> 
> 
> 
> 
> To unsubscribe from the CCP4BB list, click the following link:
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> 
> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing 
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Re: [ccp4bb] Linux Distro for setting up workstations - Is CentOS still a good choice?

2021-02-20 Thread Paul Emsley 
FWIW, looks like somebody at ETH Zurich is (or had been) trying to bring 
Coot into the OS:


http://phd-sid.ethz.ch/debian/coot/coot-0.9.2/

Hello! Let me know if I can help.

Paul.


On 20/02/2021 15:35, Tim Gruene wrote:

Hi Matthias,

I have been using Debian for more than a decade. Every stable release
is supported for at least 5 years.
Many crystallographic libraries and some programs are part of the
standard repository, like raster3d, pymol, shelxle, libccp4,
libclipper, ...

Debian is particularly stable, and requires little maintenance.

Cheers,
Tim

On Fri, 19 Feb 2021 21:35:46 +0100
Matthias Zeug  wrote:


Hi all,



I just came across the (already quite old) news that Red-Hat switches
their support-policy for CentOS to a rolling preview model (replacing
CentOS Linux by CentOS Stream):

https://www.zdnet.com/article/why-red-hat-dumped-centos-for-centos-stream/

https://www.enterpriseai.news/2021/01/22/red-hats-disruption-of-centos-unlea
shes-storm-of-dissent/



I wondered if that has any implications for the community, as
scientific programs - maybe except the big ones like coot, Phenix,
and ccp4 - are often not *that* well maintained for an extended
period. I had the impression CentOS was liked especially for its
"unbreakability,"  and it seems to be the main developing platform
for some widely used smaller programs (e.g., adxv).



Do you think it would be advisable to switch to a Ubuntu-distro when
setting up new workstations in the future, or is it safe to stick to
CentOS?



Please let me know what you think :-)



Best,



Matthias





Matthias Zeug

Buchmann Institute of Molecular Life Sciences

Goethe University Frankfurt






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Re: [ccp4bb] Linux Distro for setting up workstations - Is CentOS still a good choice?

2021-02-20 Thread Tim Gruene 
Hi Matthias,

I have been using Debian for more than a decade. Every stable release
is supported for at least 5 years. 
Many crystallographic libraries and some programs are part of the
standard repository, like raster3d, pymol, shelxle, libccp4,
libclipper, ...

Debian is particularly stable, and requires little maintenance. 

Cheers,
Tim

On Fri, 19 Feb 2021 21:35:46 +0100
Matthias Zeug  wrote:

> Hi all,
> 
> 
> 
> I just came across the (already quite old) news that Red-Hat switches
> their support-policy for CentOS to a rolling preview model (replacing
> CentOS Linux by CentOS Stream):
> 
> https://www.zdnet.com/article/why-red-hat-dumped-centos-for-centos-stream/
> 
> https://www.enterpriseai.news/2021/01/22/red-hats-disruption-of-centos-unlea
> shes-storm-of-dissent/
> 
> 
> 
> I wondered if that has any implications for the community, as
> scientific programs - maybe except the big ones like coot, Phenix,
> and ccp4 - are often not *that* well maintained for an extended
> period. I had the impression CentOS was liked especially for its
> "unbreakability,"  and it seems to be the main developing platform
> for some widely used smaller programs (e.g., adxv).
> 
> 
> 
> Do you think it would be advisable to switch to a Ubuntu-distro when
> setting up new workstations in the future, or is it safe to stick to
> CentOS?
> 
> 
> 
> Please let me know what you think :-)
> 
> 
> 
> Best,
> 
> 
> 
> Matthias
> 
> 
> 
> 
> 
> Matthias Zeug
> 
> Buchmann Institute of Molecular Life Sciences
> 
> Goethe University Frankfurt
> 
> 
> 
> 
> 
> 
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
> 
> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a
> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are
> available at https://www.jiscmail.ac.uk/policyandsecurity/



-- 
--
Tim Gruene
Head of the Centre for X-ray Structure Analysis
Faculty of Chemistry
University of Vienna

Phone: +43-1-4277-70202

GPG Key ID = A46BEE1A



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Description: OpenPGP digital signature

Re: [ccp4bb] Rigaku CrystalTrak Web not working

2021-02-20 Thread Johannes Cramer 
Hi Pavel,

what I meant is, that the crystal hotel usually has a computer attached to
it and it has the software on it. This software is not a browser/flash
based program. So if you can physically go to the location where your
crystals are stored, you can use the local computer that is hosting the
webserver and look at it there. At least that is the way it is setup in our
facility.

Cheers,
Johannes

Am Fr., 19. Feb. 2021 um 16:55 Uhr schrieb Pavel Mader <
mader.pa...@seznam.cz>:

> Hi Johannes,
>
> just making sure that there is no misunderstanding. I am currently working
> in Dr. Frank Sicheri lab at Mount Sinai Hospital in Toronto, ON, Canada. Is
> this the local installation you are talking about? I am just using my Czech
> email account, since I have the CCP4BB already set up on this account...
>
> Thanks,
>
> Pavel
>
> -- Původní e-mail --
> Od: Johannes Cramer 
> Komu: Pavel Mader 
> Datum: 19. 2. 2021 7:04:48
> Předmět: Re: [ccp4bb] Rigaku CrystalTrak Web not working
>
>   Hey Pavel,
>
> afaik our local installation of the software still works. So if going
> there physically is an option for you, you can try that.
>
> Cheers,
> Johannes
>
> Am Do., 18. Feb. 2021 um 18:21 Uhr schrieb Pavel Mader <
> mader.pa...@seznam.cz>:
>
> Hello everyone,
>
> is there anyone else, who is using Rigaku CrystalTrak Web system (in our
> case version 2.3.4) for checking images of crystallization experiments?
> Recently (on January 14, 2021) the Adobe has stopped supporting the Flash
> support needed for the CrystalTrak web version from being fully functional.
>
> Is there anyone else, who has been facing this problem? Is there any good
> solution?
>
> Thanks,
>
> Pavel Mader
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
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>
>



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