Hi all,
By popular demand (yeah, me too) the HTML versions of the old USF manuals have
been kindly added to the GitHub site (link below) by Martyn Winn.
Also, the machine in Uppsala that used to serve them has finally given up the
ghost so GitHub is now the only source of USF source code and documentation.
--Gerard
PS: I managed to mistype the word "GitHub" twice while composing this email,
as GutHub and HitHub...
On Thu, 4 Mar 2021, Gerard DVD Kleywegt wrote:
Hi all,
Following up on this: some time ago, Martyn Winn was kind enough to put the
source of a bunch of old Uppsala Software Factory programs in GitHub:
https://github.com/martynwinn/Uppsala-Software-Factory
It's all unsupported now (I haven't compiled anything in 12 years...) but
free to do with whatever you like.
(The website in Uppsala has unfortunately not been accessible for several
months already. This means that the manuals are not online. If there is
interest I could post a tgz file with -as far as I can determine- the latest
version of all manuals in HTML format (0.8 MB total).)
--Gerard
On Wed, 3 Mar 2021, James Holton wrote:
Yes, I stand corrected. "mapmask" is the CCP4 program.
mapman is still around. I even found a way to get it to work on 64-bit!
https://git.bl831.als.lbl.gov/jamesh/map-bender/-/blob/master/mapman_regression_test.csh
-James Holton
MAD Scientist
On 3/3/2021 9:10 AM, Jon Cooper wrote:
For old-schoolers, mapmask (once known as extend) in ccp4 does this.
Mapman was from the Upsala suite and became XDLmapman in ccp4, but then
became unusable and disappeared. I liked the original mapman as you had
to
actually give a name for your map, like 'jim' or 'jon'.
Best wishes, Jon Cooper
Sent from ProtonMail mobile
-------- Original Message --------
On 1 Mar 2021, 21:19, James Holton < jmhol...@lbl.gov> wrote:
The CCP4 program you are looking for is called "mapman", and the
option you need is "border".
-James Holton
MAD Scientist
On 2/26/2021 8:07 AM, Horrell, Sam (DLSLtd,RAL,LSCI) wrote:
Hello BB,
I’m trying to make an image of some electron density in pymol but
am running into a problem, my atoms are half in and half out of
the unit cell so I only get half the density.
Has anyone ran into this problem previously, and if so, is there
a way to shift the origin, extend the map, or something so
everything is covered?
I realise this is not a ccp4 problem exactly, so I am ready for
the inevitable replies, but I imagine a program in ccp4 might be
the answer.
Cheers,
Sam
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--Gerard
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Gerard J. Kleywegt
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The opinions in this message are fictional. Any similarity
to actual opinions, living or dead, is purely coincidental.
******************************************************************
Little known gastromathematical curiosity: let "z" be the
radius and "a" the thickness of a pizza. Then the volume
of that pizza is equal to pi*z*z*a !
******************************************************************
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