Re: [ccp4bb] PDB to AlphaFold via Uniprot

2022-08-02 Thread Paul Bond
Hi Paul, You have probably solved this already, but in case you are interested I have written a script to superpose AlphaFold models using PDBe mmCIF annotations, AlphaFold DB and Gemmi (link below), as I had already done something similar in a previous project. It is probably better to use

[ccp4bb] Job advert: Postdoc CryoEM

2022-08-02 Thread Panne, Daniel (Prof.)
Dear all, We currently have an open postdoc position in our Institute! The Panne group focuses on signal processing on enhancers and how 3D genome organisation contributes to various aspects of genome function. For examples of recent work see Nature 578, 472–476 (2020); NSMB 27, 233–239

Re: [ccp4bb] Regarding the correct space group identification

2022-08-02 Thread Andrew Leslie - MRC LMB
Dear Sayan, For interest, the only other example I know of where diffraction images show two different space groups is presented in a paper by Zbyszek Dauter et al, Acta Cryst D61, 967-975, 2005, where crystals of the proteolytic domain of Lon contained superimposed

Re: [ccp4bb] scitbx issue....

2022-08-02 Thread Harry Powell
Hi Billy Many thanks for this - unfortunately, there are other dependencies that appear not to be included in > conda create -n new_environment -c conda-forge cctbx-base python=3.9 e.g. > [MacPro:~] harry% conda activate phenix_env > (phenix_env) [MacPro:~] harry% python > Python 3.9.13 |