Re: [ccp4bb] Refinement of heavy atoms using SOLVE or SHARP or others

2023-10-11 Thread Aaron Finke
Hi, SHARP and autoSHARP are manually run using the Sushi interface, which is not the easiest thing to set up. For straightforward heavy atom refinement, you can run both SHARP and autoSHARP on the command line. If you are familiar with SHARP’s input files and parameters, instructions can be

Re: [ccp4bb] PyMol tutorials: Summary

2023-08-08 Thread Aaron Finke
Hi all, I’ll add to this list the videos by Pymol Ross- I particularly like his videos because he shows how to do things via both the GUI and the command line: https://www.youtube.com/@pymolross Best, Aaron -- Aaron Finke Beamline Scientist, MAX IV Lund

Re: [ccp4bb] Crystallisation textbook

2023-07-16 Thread Aaron Finke
I second the Acta F special issue (as an unbiased reviewer): https://journals.iucr.org/special_issues/2016/crystallization/ Best, Aaron -- Aaron D. Finke, PhD Staff Scientist, MAX IV Laboratory e-mail: aaron.fi...@maxiv.lu.se On Jul 14, 2023, at 17:19,

Re: [ccp4bb] checkCIF alert

2023-06-12 Thread Aaron Finke
to include low-angle reflections measured “behind” the beamstop. In your CheckCIF you may have an PLAT919_ALERT that checks for such reflections. Best, Aaron -- Aaron Finke Beamline Scientist, MAX IV Lund University e-mail: aaron.fi...@maxiv.lu.se<mailto:aaron

Re: [ccp4bb] checkCIF alert

2023-06-12 Thread Aaron Finke
to include low-angle reflections measured “behind” the beamstop. In your CheckCIF you may have an PLAT919_ALERT that checks for such reflections. Best, Aaron -- Aaron Finke Beamline Scientist, MAX IV Lund University e-mail: aaron.fi...@maxiv.lu.se<mailto:aaron

[ccp4bb] REMINDER:

2021-09-27 Thread Aaron Finke
p>. We sincerely hope you will join us. Please reach out to the CHESS Users Office<mailto:chessuseroff...@cornell.edu> or Aaron Finke with any questions or for further details. Warm regards, Aaron Finke and Daniel Keedy, organizers ------ Aaron Finke

[ccp4bb] Prof. Jack Dunitz, 1923-2021

2021-09-14 Thread Aaron Finke
, please use the following email address: jack_condole...@ethz.ch<mailto:jack_condole...@ethz.ch> Aaron -- Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu<mailto:af...@co

[ccp4bb] CHESS Ambient Crystallography Workshop, Sept 30-Oct 1, 2021

2021-09-07 Thread Aaron Finke
p>. We sincerely hope you will join us. Please reach out to the CHESS Users Office<mailto:chessuseroff...@cornell.edu> or Aaron Finke with any questions or for further details. Warm regards, Aaron Finke and Daniel Keedy, organizers ------ Aaron Finke

[ccp4bb] Postdoctoral Associate Position at CHESS, Cornell University

2021-02-23 Thread Aaron Finke
ition here: https://academicjobsonline.org/ajo/jobs/18189 For more information about the position, please contact myself or Marian Szebenyi (dm...@cornell.edu<mailto:dm...@cornell.edu>). ------ Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: a

[ccp4bb] Beam Time for Macromolecular Crystallography at CHESS: Spring 2021 Proposals due TODAY!

2020-11-19 Thread Aaron Finke
cell? We can accommodate your needs and more! Interested? Instructions for submitting a proposal here: https://www.chess.cornell.edu/users/new-user-guide Feel free to contact me with any questions! Aaron ------ Aaron Finke Staff Scientist, MacCHESS Cornell

[ccp4bb] Beam Time for Macromolecular Crystallography at CHESS: Now Accepting Spring 2021 Proposals

2020-10-27 Thread Aaron Finke
l? We can accommodate your needs and more! Interested? Instructions for submitting a proposal here: https://www.chess.cornell.edu/users/new-user-guide Feel free to contact me with any questions! Aaron ------ Aaron Finke Staff Scientist, MacCHESS Cornell Univers

[ccp4bb] Pointless with fast close?

2020-06-26 Thread Aaron Finke
with the pointless references. I don’t know why it’s doing that and it’s making a batch run of pointless much longer than it should be. Any suggestions? Thanks, Aaron -- Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu

Re: [ccp4bb] Off-topic (somewhat): Call for papers on structure-guided kinase drug discovery

2019-11-22 Thread Aaron Finke
ut I think everyone, especially young scientists, benefit from those as well. Aaron ------ Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu<mailto:af...@cornell.edu> On Nov 22, 2019, at 8:58 AM, Isabel Uson mailto:iuf...@ibmb

[ccp4bb] Beam Time for Macromolecular Crystallography at CHESS: Rapid Access Available for Fall 2019

2019-10-07 Thread Aaron Finke
commodate your needs and more! Interested? Learn how to submit a proposal here: https://www.chess.cornell.edu/users/new-user-guide Feel free to contact me with any questions! Aaron ------ Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@c

Re: [ccp4bb] beryllium chloride

2019-04-02 Thread Aaron Finke
a way.” I also just read that beryllium used to be called glucinium after the Greek for “sweet,” because many beryllium salts taste sweet. Yikes. Aaron -- Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu<mailto

Re: [ccp4bb] beryllium chloride

2019-04-02 Thread Aaron Finke
-- Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu<mailto:af...@cornell.edu> On Apr 2, 2019, at 10:21 AM, Zhijie Li mailto:zhijie...@utoronto.ca>> wrote: Sometime ago when I was watching a Youtube video on magnetron I learnt th

Re: [ccp4bb] beryllium chloride

2019-04-02 Thread Aaron Finke
1. Yes, I meant the tetrahydrate, [Be(H2O)4]2+ 2Cl- 2. Bob, I studied that page, and couldn’t get past BeCl2 is known to have a “sweetish taste.” I’m very glad chemists no longer characterize chemicals by their taste anymore... -- Aaron Finke Staff

Re: [ccp4bb] beryllium chloride

2019-04-01 Thread Aaron Finke
-- Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu<mailto:af...@cornell.edu> On Apr 1, 2019, at 17:07, Alexandra Deaconescu mailto:alexandra_deacone...@brown.edu>> wrote: Hello, Is anyone aware of a company that sells Beryllium chlori

Re: [ccp4bb] Backup of whole synchrotrons

2019-04-01 Thread Aaron Finke
nitrogen necessary, and all they require for subsistence are cheap coffee and free pizza. To date, nobody has noticed. -- Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu<mailto:af...@cornell.edu> On Mar 31, 2019, at 11

Re: [ccp4bb] Open Access Repositories for Big Data?

2019-01-18 Thread Aaron Finke
taset over multiple DOIs but it feels like “cheating the system” a bit. The CXIDB sounds promising, though! Thanks, Aaron -- Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu<mailto:af...@cornell.edu> On Jan 18, 2019,

[ccp4bb] Open Access Repositories for Big Data?

2019-01-18 Thread Aaron Finke
ary dry heaving response I got when I brought up the idea to our IT department implied they were less enthused with the idea than I was. So a cloud service would be far more preferable as a long term solution. Thanks, Aaron -- Aaron Finke Staff Scient

Re: [ccp4bb] Structure solution - hexapeptide

2018-08-02 Thread Aaron Finke
, but you may get something. As a last resort, if you think this hexapeptide may have any secondary structure, you may want to try ab initio MR with ARCIMBOLDO. Aaron -- Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-05-31 Thread Aaron Finke
, using the above approach has comparable performance to neggia and does not have the compression compatibility issue. Aaron -- Aaron Finke Staff Scientist, MacCHESS Cornell University e-mail: af...@cornell.edu<mailto:af...@cornell.edu> On May 31, 2018

[ccp4bb] Visualize symmetry operations

2017-01-04 Thread Aaron Finke
Dear CCP4-keteers, Is there a program that can visualize symmetry operation positions (e.g. twofold screws, fourfolds) in protein structures, like CCDC Mercury does for small molecules? Thanks in advance, Aaron -- Aaron Finke Staff Scientist, MacCHESS