[ccp4bb] Regarding symmetry notion in coot

2018-06-20 Thread Anurag Misra
Dear all, What is the meaning of the last field — the one in curly brackets -- that describes the symmetry transformation of a given molecule in coot? For example, for a given X Y Z, coot displays the symmetry transformation of an equivalent position as " -X, Y+1/2, Z + (0 -1 1) & { 1 0 1 }”.

Re: [ccp4bb] positive density near asparagine

2017-08-20 Thread Anurag Misra
Hi Zach, It seems the residues which you are discussing belong to an helix. It is not clear what is the present Rfree, however the residues side chains are not properly fitting. Did you use real space refinement in coot using helix secondary structure constraints? Hopefully it will push Asn