[ccp4bb] Bendability of DNA

2014-12-30 Thread Gajanan Arbade
Hello CCP4 users, I am working with some DNA binding proteins. Can someone explain me how to measure/calculate the bendability of a DNA molecule after binding to proteins and foldabilty of protein molecule? It will be good if you mention any reference(s). Thanks in adv. -Gajanan

[ccp4bb] calculation of the orientation angles between helices

2014-09-17 Thread Gajanan Arbade
Hello, I am using Qhelix, for the calculation of the orientation angles between helices. when am running the demo its working,but when am uploading my pdb file it is not working, can someone help me to resolve the problem.suggest me the other softwares for the same. Thank you. Regards,

[ccp4bb] regarding ccp4bb workshops

2014-07-06 Thread Gajanan Arbade
Hello ccp4bb users, Can you guide me regarding the training programs and workshops of ccp4bb in INDIA, please? Thank You Regards, Gajanan __ Gajanan K

[ccp4bb] Buried surface area calculation..

2014-07-01 Thread Gajanan Arbade
Hello, Am working with some DNA binding proteins. If I want to calculate the buried surface area, which software tools should i use? Suggest me some windows based programs to solve my purpose. Thank you Regards, Gajanan __ Gajanan K Arbade Research