Re: [ccp4bb] Display x-ray images in windows
And in the paid for version the keyword is AgentExtraOptions = -defer 0 Thomas On 03/24/2010 12:39 AM, Kay Diederichs wrote: As I recently learnt from Andy Arvai, the -nopixmap is not needed if the (free) NX server has AGENT_EXTRA_OPTIONS_X=-defer 0 in its node.conf . I like this a lot because I tend to forget about the -nopixmap option, _and_ it does not work for the zoom window. HTH, Kay Am 20:59, schrieb James Holton: Although the extension *.img is used by more than one detector manufacturer, you are probably looking at data from an ADSC Inc detector? Andy Arvai's adxv is a popular viewer for this format: http://www.scripps.edu/~arvai/adxv.html Run it with the option -nopixmap if you are using it inside an NX client. -James Holton MAD Scientist
Re: [ccp4bb] Alterate conformers destroyed by Refmac!
Not exactly the same setup, but maybe close enough. I used Intel's 11.1 compilers on RHEL4.8 to build refmac (5.5.0102 and 5.5.0105) and it will not run the refmac_tls script in the CCP4 example area. It turns out that the LAPACK libraries (3.0) that comes with RHEL4 and the Intel (11.1) compiler does not play nice (10.1 worked). Building a newer version of netlib LAPACK or using Intel's mkl_lapack makes refmac happy. This may not have anything to do with the problems you see but nevertheless, it's worth considering... Thomas On 10/23/2009 06:04 AM, Ian Tickle wrote: All – we’re having a problem with Refmac (version 5.5.0102) in CCP4 6.1.2 that I compiled from source using ifort v11.0 on Centos 4.6. When I refine a structure with a HIS in alternate conformations (all atoms except N, C O doubled up) it completely destroys the sidechains of both copies. Same thing happens with any other residue type (e.g. SER). All single-conformer residues, including some ligands are fine. Has anyone else noticed this? Is this a known problem with this version/compiler/OS? Cheers -- Ian -- Thomas Eriksson | thomas.eriks...@slac.stanford.edu SSRL/Structural Molecular Biology |Tel (650)926-4530 2575 Sand Hill Rd. MS99 |Cell (650)714-6004 Menlo Park, CA 94025 |Fax (650)926-3292
Re: [ccp4bb] Missing fonts...
Harry Powell wrote: Hi folks I've had a couple of reports recently of people trying to run ipmosflm on Fedora Core 8 machines, and they get the following error - ** xdl_view error in routine xdl_open_view ** ** Unable to load *adobe-courier-medium-r*--8* font ** I'm assuming that the install for FC8 is not including all the Courier fonts; since I don't have an FC8 machine handy, could anyone here offer advice about the best way to install these? Fedora 8 no longer installs 75dpi fonts with the default installation. 'yum install xorg-x11-fonts-75dpi' will get you the needed fonts. Thomas
